Antisense Oligonucleotide-Mediated Terminal Intron Retention of the ...

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Supplemental Figure RT-PCR analysis of SMN2 transcripts from SMA fibroblasts following initial screening with exon 8 targeting 2´O-Methyl AOs (300, 150, ...
OMTN, Volume 11

Supplemental Information

Antisense Oligonucleotide-Mediated Terminal Intron Retention of the SMN2 Transcript Loren L. Flynn, Chalermchai Mitrpant, Ianthe L. Pitout, Sue Fletcher, and Steve D. Wilton

Supplemental Information

Supplemental Figure RT-PCR analysis of SMN2 transcripts from SMA fibroblasts following initial screening with exon 8 targeting 2´O-Methyl AOs (300, 150, 75 nM). Anti ISS-N1 was used as a positive control for transfection efficiency and a sham control AO was used as a transfection negative control. A 100 bp size marker was used for comparison, and a RT-PCR no-template negative control was loaded in the final lane.

Supplemental Methods Sequences and details of all primers used in this study. Primer name

Sequence 5' -> 3'

Product size

SMNex4Fwd

AGGTCTCCTGGAAATAAATCAG

FL 404 bp

SMNex8Rev

TGGTGTCATTTAGTGCTGCTCT

Δ7 350 bp Ex/in7 848 bp

SMNex_in7Fwd

TAAGGAGTAAGTCTGCCAGC

SMNin7_Rev1

CTTCCACACAACCAACCAGT

229 bp

SMNin7_Rev2

CTGGTCTGCCTACTAGTGAT

296 bp

SMNex_in7Fwd

TAAGGAGTAAGTCTGCCAGC

SMNin7_PolyA_Rev1

TTTTTTTTTTTTTTTGGCATCAAAATT

185 bp

SMNin7_PolyA_Rev2

TTTTTTTTTTTTTTTGGCATCATATCC

299 bp

Cyclin-D_Fwd

TGTTCGTGGCCTCTAAGATGAA

407 bp

Cyclin-D_Rev

GTCCGGGTCACACTTGATCAC