b) HIV - PLOS

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Sample size (N). Pairwise Diversity. -7.5. -5.0. -2.5. 0.0. 2.5. 10. 100. Sample size (N). Tajima's D. -7.5. -5.0. -2.5. 0.0. 2.5. 10. 100. Sample size (N). Tajima's D.
HIV MPD = 0.004, total reads = 905

MPD = 0.015, total reads = 1377

0.02

0.01

0.00

0.01

Sample size (N)

100

10

0.0

0.0

0.0

-2.5

-5.0

Tajima's D

2.5

-2.5

-5.0

-7.5

Sample size (N)

10

Sample size (N)

0.0025

MPD = 0.016, total reads = 1462

0.0000

Sample size (N)

0.010

0.005

100

Sample size (N)

-7.5

Sample size (N)

-2.5

-5.0

100

MPD = 0.002, total reads = 1969

Sample size (N)

0.005

0.000

MPD = 0.035, total reads = 1830

Sample size (N)

0.015

0.010

0.005

100

0.02

0.01

0.00 10

Sample size (N)

100

10

0

-2

-2

-2

Tajima's D

0

-6

-4 -6

10

Sample size (N)

100

100

MPD = 0.007, total reads = 979

0

-4

Sample size (N)

0.03

0.000 10

-5.0

10

Pairwise Diversity

Pairwise Diversity

0.010

100

-2.5

100

0.020

0.015

Sample size (N)

-7.5 10

0.020

0.01

0.0

-7.5 10

0.02

10

Tajima's D

Tajima's D

-5.0

MPD = 0.031, total reads = 1569

100

0.0

-2.5

100

0.00 10

0.0

Sample size (N)

0.03

0.000 10

-5.0

10

Pairwise Diversity

0.0050

100

-2.5

100

0.015

0.0075

Sample size (N)

-7.5

100

Pairwise Diversity

Pairwise Diversity

0.02

2.5

0.0100

Tajima's D

0.03

0.00 10

MPD = 0.009, total reads = 825

Pairwise Diversity

0.01

0.04

2.5

10

Tajima's D

0.02

100

Tajima's D

Tajima's D

Sample size (N)

-7.5

c)

0.03

0.00 10

b)

0.05

Pairwise Diversity

0.04

Pairwise Diversity

Pairwise Diversity

0.03

MPD = 0.035, total reads= 2315

Tajima's D

a)

Sample size (N)

100

-4 -6

10

Sample size (N)

100

10

Sample size (N)

100