http://www.broad.mit.edu/annotation/genome/rhizopus_oryzae/Blast.html. Cryptococcus .... http://paramecium.cgm.cnrs-gif.fr/tool/blast. Kinetoplastids:.
Supplementary dataset S1: Web sites and references for eukaryotic genome projects.
Metazoans: Homo sapiens sapiens (Hs) (1) http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=9606 Mus musculus (Mm) (2) http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=10090 Gallus gallus (Gg) (3) http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=9031 Xenopus tropicalis (Xt) (unpublished) http://genome.jgi-psf.org/Xentr4/Xentr4.home.html Danio rerio (Dr) (4) http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=7955 Tetraodon nigroviridis (Tn) (5) http://www.genoscope.cns.fr/blat-server/cgi-bin/tetraodon/webBlat Fugu rubripes/Takifugu rubripes (Fu) (6) http://genome.jgi-psf.org/Takru4/Takru4.home.html Ciona instestinalis (Ci) (7) http://genome.jgi-psf.org/Cioin2/Cioin2.home.html Ciona savignyi (Cs) (8) http://www.broad.mit.edu/cgi-bin/annotation/ciona/blast_page.cgi Drosophila melanogaster (Dm) (9) http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=7227 Drosophila pseudoobscura (Dp) (10) http://www.hgsc.bcm.tmc.edu/blast/?organism=Dpseudoobscura Anopheles gambiae (Ag) (11) http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=mosquito Aedes egypti (Ae) (12) http://www.tigr.org/tigr-scripts/tgi/T_index.cgi?species=a_aegypti Apis mellifera (Am) (13) http://www.ncbi.nlm.nih.gov/genome/seq/BlastGen/BlastGen.cgi?taxid=7460
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Bombyx mori (Bo) (14) http://pistil.ab.a.u-tokyo.ac.jp/kanzen/blast.html Tribolium casteneum (Tc) (15) http://www.bioinformatics.ksu.edu/blast/bblast.html Caenorhabditis elegans (Ce) (16) http://www.wormbase.org/db/searches/blat Caenorhabditis briggsae (Cb) (17) http://www.wormbase.org/db/searches/blat Brugia malayi (Bm) (18) http://tigrblast.tigr.org/er-blast/index.cgi?project=bma1 Schistosoma mansoni (Sm) (19) http://www.genedb.org/genedb/smansoni/blast.jsp
Fungi: Rhizopus oryzae (Ro) (unpublished) http://www.broad.mit.edu/annotation/genome/rhizopus_oryzae/Blast.html Cryptococcus neoformans JEC21 (Cn) (20) http://tigrblast.tigr.org/er-blast/index.cgi?project=cna1 Ustilago maydis (Um) (21) http://www.broad.mit.edu/annotation/genome/ustilago_maydis/Blast.html Phanerochaete chrysosporium (Pc) (22) http://genome.semo.edu/cgi-bin/blastall.pl Coprinus cinereus/Coprinopsis cinerea (Cc) (unpublished) http://genome.semo.edu/cgi-bin/blastall.pl Neurospora crassa (Nc) (23) http://www.broad.mit.edu/annotation/genome/neurospora/Blast.html Gibberella zeae/Fusarium graminearum (Gz)(24) http://www.broad.mit.edu/annotation/genome/fusarium_graminearum/Blast.html Magnaporthe grisea (Mg) (25) http://www.broad.mit.edu/annotation/genome/magnaporthe_grisea/Blast.html
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Aspergillus nidulans (An) (26) http://www.broad.mit.edu/annotation/genome/aspergillus_nidulans/Blast.html Aspergillus fumigatus (Af) (27) http://tigrblast.tigr.org/er-blast/index.cgi?project=afu1 Coccidioides posadasii (Co) (unpublished) http://tigrblast.tigr.org/er-blast/index.cgi?project=cpa1 Schizosaccharomyces pombe (Sp) (28) http://www.genedb.org/genedb/pombe/blast.jsp Yarrowia lipolytica (Yl) (29) http://cbi.labri.fr/Genolevures/blast.php Candida albicans (Ca) (30) http://www.candidagenome.org/cgi-bin/nph-blast Debaryomyces hansenii (Dh) (29) http://cbi.labri.fr/Genolevures/blast.php Kluyveromyces lactis (Kl) (29) http://cbi.labri.fr/Genolevures/blast.php Kluyveromyces waltii (Kw) (31) http://www.ncbi.nlm.nih.gov/sutils/genom_table.cgi?organism=fungi Eremothecium gossypii (Eg) (32) http://www.ncbi.nlm.nih.gov/sutils/genom_table.cgi?organism=fungi Candida grabata (Cg) (29) http://cbi.labri.fr/Genolevures/blast.php Saccharomyces cerevisiae (Sc) (33) http://seq.yeastgenome.org/cgi-bin/nph-blast2sgd Microsporidians: Encephalitozoon cuniculi (Ec) (34) http://www.ncbi.nlm.nih.gov/sutils/genom_table.cgi?organism=fungi Nosema locustae/Antonospora locustae (Nl) (unpublished) http://gmod.mbl.edu/perl/site/antonospora01?page=gblast Amoebozoans:
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Dictyostelium discoideum (Dd) (35) http://dictybase.org/db/cgi-bin/blast.pl Entamoeba histolytica (Eh) (36) http://www.genedb.org/genedb/ehistolytica/blast.jsp Entamoeba invadens (Ei) (unpublished) http://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=Protozoa Entamoeba dispar (Ed) (unpublished) http://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=Protozoa Green plants: Arabidopsis thaliana (At) (37) http://www.ncbi.nlm.nih.gov/blast/Genome/PlantBlast.shtml?10 Oryza sativa (Os) (38) http://www.ncbi.nlm.nih.gov/blast/Genome/PlantBlast.shtml?10 Populus trichocarpa (Po) (39) http://genome.jgi-psf.org/cgi-bin/runAlignment?db=Poptr1&advanced=1 Green algae: Chlamydomonas reinhardtii (Cr) (40) http://genome.jgi-psf.org/cgi-bin/runAlignment?db=Chlre3&advanced=1 Red algae: Cyanidioschyzon merolae (Cm) (41) http://merolae.biol.s.u-tokyo.ac.jp/blast/psiblast.html Galdieria sulphuraria (Gs) (42) http://genomics.msu.edu/cgi-bin/galdieria/blast.cgi?accept=YES
Diatoms: Thalassiosira pseudonana (Th) (43) http://genome.jgi-psf.org/cgi-bin/runAlignment?db=thaps1&advanced=1 Phaeodactylum tricornutum (Ph) (44) http://genome.jgi-psf.org/cgi-bin/runAlignment?db=Phatr1&advanced=1 Oomycetes:
4
Phytophthora sojae (Ps) (45) http://genome.jgi-psf.org/cgi-bin/runAlignment?db=sojae1&advanced=1 Phytophthora ramorum (Pr) (45) http://genome.jgi-psf.org/cgi-bin/runAlignment?db=ramorum1&advanced=1 Apicomplexans: Plasmodium falciparum (Pf) (46) http://www.genedb.org/genedb/malaria/blast.jsp Plasmodium yoelii yoelii (Py) (47) http://tigrblast.tigr.org/er-blast/index.cgi?project=pya1 Theileria annulata (Ta) (48) http://www.genedb.org/genedb/annulata/blast.jsp Theileria parva (Tp) (49) http://www.ncbi.nlm.nih.gov/sutils/blast_table.cgi?taxid=Protozoa Toxoplasma gondii (Tg) (50) http://toxodb.org/restricted/toxoDBblast.shtml Cryptosporidium parvum (Cp) (51) http://www.cryptodb.org/blast/index.shtml Cryptosporidium hominis (Ch) (52) http://www.cryptodb.org/blast/index.shtml Ciliates: Tetrahymena thermophila (Tt) (53) http://seq.ciliate.org/cgi-bin/blast-tgd.pl Paramecium tetraurelia (Pt) (54) http://paramecium.cgm.cnrs-gif.fr/tool/blast Kinetoplastids: Trypanosoma brucei (Tb) (55) http://www.genedb.org/genedb/tryp/blast.jsp Trypanosoma cruzi (Ti) (56) http://www.genedb.org/genedb/tcruzi/blast.jsp
5
Leishmania major (Lm) (57) http://www.genedb.org/genedb/leish/blast.jsp Trichomonad: Trichomonas vaginalis (Tv) (58) http://tigrblast.tigr.org/er-blast/index.cgi?project=tvg Diplomonad: Giardia lamblia (Gl) (59) http://www.giardiadb.org/giardiadb/showQuestion.do?questionFullName=UniversalQuestions .UnifiedBlast&target=GENE
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