Cell-Surface Protein Profiling Identifies Distinctive Markers of ...

1 downloads 0 Views 2MB Size Report
... and 5´-GGGAAGGCCACAGACACATC-3´ for MYOG,. 5´-CGTCAAAGGTGAAGCAGGAC-3´ and 5´-CTCCAGTGCCCGTAGATCAG-3´ for NDUFA13, and.
Stem Cell Reports, Volume 7

Supplemental Information

Cell-Surface Protein Profiling Identifies Distinctive Markers of Progenitor Cells in Human Skeletal Muscle Akiyoshi Uezumi, Masashi Nakatani, Madoka Ikemoto-Uezumi, Naoki Yamamoto, Mitsuhiro Morita, Asami Yamaguchi, Harumoto Yamada, Takehiro Kasai, Satoru Masuda, Asako Narita, Yuko Miyagoe-Suzuki, Shin'ichi Takeda, So-ichiro Fukada, Ichizo Nishino, and Kunihiro Tsuchida

A

Myogenic

*

350

*

300

Number of cells / field

Number of cells / field

350

Mesenchymal

250 200

*

150 100 50

300

200 150 100 50

0

0

Non

B

*

1.4

Col I

Col IV

Fib

Lam

Non

Myogenic

Col I

Col IV

Fib

Lam

Mesenchymal

*

1.4 1.2

Relative absorbance

1.2

Relative absorbance

*

250

1 0.8 0.6 0.4 0.2

1 0.8 0.6 0.4 0.2

0

0

-

bFGF EGF EGF IGF-I IGF-I LIF 2.5 2.5 10 2.5 10 2.5

LIF 10 (ng/ml)

Figure S1

-

bFGF EGF EGF IGF-I IGF-I LIF 2.5 2.5 10 2.5 10 2.5

LIF 10 (ng/ml)

4

10

2

4

5

5

2

10 5

5

2

4

3

10

4

10

5

10

4

10

5

2

3

4

5

10 5

5

0

10

3

10

4

10

4

10

5

4

3

10

4

10

5

10

2

3

4

5

10

5

10 4

5

10 4

10

2

3

10

4

10

HLA-A,B,C

10

5

3

0

0

10

10 4

10

0

0

46

5

10 5

2

10 2

3

10 3

CX3CR1

10 2

10

10 2

10

10 4

10

0

2

10 3

10 4

10

10 3

0.0428

10 5

10 4

0

10 3

CD352 (NTB-A)

10 2

2

3

4

5

0

10

10

10

10

10 5

0

0.214

10 5

0

10

10

10

10

10

4

CD324 (E-Cadherin)

10

3

0

2

4

10 3

10

10

0

0.0216

5

10 2

0

10

10 2

10 3

10

10

5

2

CD298

10

2

0

10

10 3

10 4

2

0

10

100

10 4

10 3

10 5

10 5

0

3

CD273 (B7-DC)

10

0

0

2

10 2

10

10 4

10 3

10 5

10 2

10 3

10 4

20.4

10

2

0

10

10 3

10 5

0

2

CD254

10

0.0667

10 5

2

3

4

5

10 4

2

0

10

10 3

0

10 4

Blank

10 3

10

10

10

10

10 4

10 2

10

4

10

3

10

4

10 3

10 4

0.221

10 4

CD80

10 3

10

2

10

3

10

4

0.153

CD220

10 2

10 2

10 4

0.238

10 3

0.106

CD51

10

CD62L

10 2

2

5

10

2

10

3

10

4

10

2

10

3

10

4

0.109

CD274 (B7-H1)

10

10

10

10

10

4

10 2

10 3

10 4

0.151

CD325

10

3

0

0

10 3

10 4

2

10

3

10

4

HLA-A2

10

10

5

10 5

0.0853

CXCR7

10 2

0.24

5

5

5

10 5

10

CD354 (TREM-1)

0

0

2

0.175

CD300e (IREM-2)

0

0

94.6

5

10 5

10 5

10 5

10

CD255 (TWEAK)

0

0

0

0

10

99.9

5

2

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

10 3

10

5

0

10 2

10 3

10 4

10

0

10 2

2

3

4

5

2

2

4

2

3

4

5

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

0.0427

3

2

0

10

10 3

10 4

10

5

0

10 2

10 5

10 3

10 5

0

10

10

10

10

10 4

CD79b

10 3

10

5

10 5

0.0216

10 4

CD33

10 3

0.0872

10

5

4

5

10 3

10

10

0

10 4

0

10 2

10

4

CD21

10

3

5

10 5

0.0222

10 4

CD10

10 3

96.5

10

10 5

0

0

10 5

10 2

0.577

10 4

10 3

10 2

10 3

10 4

10 5

10 3

CD62E

5

10 4

10

0

10 2

4

4

10 2

0

2

10

CD45RA

10

10 2

10

2

3

CD1a

10

10 5

10 3

10

0

2

10 2

10

4

0

0

0

0

0

10 5

0

0

0.0849

CD50 (ICAM-3)

3

5

10 2

10 3

10 4

10

10

0.0427

CD45

10

2

10 3

10

0

2

2

5

10 4

10

0

10

10

10 5

0.0641

10 4

CD32

10 3

0

10

2

10 3

10 2

0

0

10 2

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

0.0659

10

5

10 4

2

10 3

0

10

CD20

10

4

10 5

10

3

2

10 3

10 4

10

10

10 4

0

2

0.151

5

10 5

0

10

10 3

10 4

10

5

10 4

CD9

10 3

4

5

10 3

10

10

0

100

10

10 2

10 2

4

0

0

10

Blank

3

10 2

10 3

10

10

10

0

0

4

10 2

10 3

10

10 5

0.216

4

10 3

10

10 5

0

0.0434

10 2

10 3

10

10 5

10 2

2

3

10

4

2

10 4

10

4

10

10

3

10

4

10

2

10

3

93

10

4

10

10

10 2

10 5

10 2

10 2

10 3

10 4

0.242

10 4

CD81

10 3

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

10

10

10

3

10

4

10

0.0861

CD300F

10

0.153

CD275 (B7-H2)

10

0.109

CD257 (BAFF)

10

5

5

5

10 2

10 3

10 4

10 5

10 2

10 3

10 4

0

2

10

3

10

4

HLA-DQ

10

10

0.0215

5

10 5

δ-Opioid Receptor

0

0.353

CD355 (CRTAM)

0

0.0659

CD326 (Ep-CAM)

0

0

0

0

0.683

5

10 5

10 5

CD221 (IGF-1R)

0

0

10 4

100

10 3

5

5

CD62P (P-selectin)

0

0.149

5

10 5

0.0216

10 4

CD34

10 3

5

10 5

0.0878

CD22

10

3

0.13

10 3

CD45RB

10

10 2

10

2

10

0.0222

CD1b

10

CD11a

10 2

10

CD51/61

0

0

0

0

0

0

0.111

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

2

3

10

4

10

2

10 2

10

2

10 4

10

4

10

10

3

10

4

0.109

10 4

CD35

10 3

10

2

10 2

10 2

10 2

10

3

10

4

10 4

10 3

10 4

5

10 5

10 5

10

10 5

0.0874

10 4

CD82

10 3

98.9

10 3

CD63

99.9

CD52

10

5

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

10

10

10

3

10

4

10

0.0887

CD301

10

1.02

CD276

10

100

CD258 (LIGHT)

10

0

0

0

10 3

10 4

2

10 4

10

3

10

4

0.149

DLL1

10 3

HLA-DR

10

10 2

0

CD357 (GITR)

10 2

0.239

5

5

5

5

10

5

10 5

10 5

CD328 (Siglec-7)

0

0

0

0

0.0653

CD226 (DNAM-1)

0

0

0

0

0.044

5

10 5

0.0444

CD23

10

3

5

10 5

10

0.0218

10 3

0.149

CD1c

10

CD11b

10 2

10

CD45RO

0

0

0

0

0

0.109

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

2

10 2

10

3

10

4

0

0

0

0

0

0

0

0

0

0

0

0

0

0

2

2

10

4

3

10

4

3

10

4

10 4

5

10 5

10

10 3

10 4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

10

10

3

10

4

10

10

10 3

10 4

2

10 4

10

3

10

4

0.212

DLL4

10 3

HLA-E

10

10 2

10 5

10

5

10 5

0.0643

CD360 (IL-21R)

10 2

8.96

5

5

5

5

10 5

CD334 (FGFR4)

10

2

0.13

CD303

10

10 5

0.0222

CD277

10

0.769

5

5

10 5

10

10

0.0889

CD261 (DR4)

10

5

10 5

10

0.0839

10 4

CD83

10 3

0.472

10 3

CD64

0.066

CD53

10

0.111

CD46

10

35.1

10 4

CD36

10 3

0.132

CD24

10

3

10 4

CD229 (Ly-9)

10 2

10 2

10 2

10

10

10 2

10

2

78

10 3

0.196

CD1d

10

CD11b (activated)

0

0

0.0627

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

3

10

4

2

2

10 2

10

10

10 2

10

2

10 4

10

4

10

3

10

4

3

10

4

0

0

0

0

0

0

0

10 3

10 4

0.147

10 4

CD84

10 3

2

10

3

10

4

5

5

5

10 5

10

10

10 5

2

10

3

10

4

2

10

3

10

4

10

3

10

4

10

10

10

10 2

10 3

10 4

100

5

5

5

5

10 5

CD335 (NKp46)

10

2

0.022

CD304

10

88

CD278 (ICOS)

10

10

10 5

10 5

0.0654

CD262 (DR5)

10

63.1

CD231 (TALLA)

10 2

10 2

10 4

0.108

10 3

0.129

CD54

10

3.04

CD47

10

100

10 4

CD38

10 3

0.0654

CD25

10

3

5

10 5

10

0.0438

10 3

0.154

CD2

10

CD11c

10 2

10

CD66a/c/e

0

0

0

0

0

0

0

0.109

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

10 2

10 3

10 4

0

2

10

3

10

4

HLA-G

10

10

0.0638

5

10 5

DR3 (TRAMP)

0

0.0222

β2-microglobulin

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

2

2

2

3

10

4

10

4

3

10

4

3

10

4

10 4

10 2

10 4

10 3

10 4

0.129

10 3

CD85a (ILT5)

10 2

10

0

0

0

0

0

0

0

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

10

3

10

4

10

10

10

10 4

10 3

10 4

99.2

BTLA

10 3

2

10

3

10

4

0.35

EGFR

10 2

10 2

0.107

5

5

5

10

5

10 5

10 5

CD336 (NKp44)

10

2

0.109

CD307

10

10

5

10 5

10 5

0.0439

CD279 (PD-1)

10

5

5

10 5

10

10

0.0883

CD263 (DcR1)

10

0.11

5

10 5

0.0214

10 3

0.133

CD55

10

75.6

CD48

10

0.219

10 4

CD39

10 3

5

10 5

10

0.0658

CD26

10

3

80.1

10 4

CD13

10 3

100

CD3

10

CD66b

10 2

10

10

10 2

10

2

10 2

10

CD235ab

0

0

0

0

0

0

0

0

0

0.0206

IFN-γ R β chain

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

2

2

3

10

4

10

4

10

3

10

4

52.7

10 4

CD40

10 3

0.438

CD27

10

3

0

10 4

CD14

10 3

0.155

CD4

10

2

10

3

10

4

10 4

10 3

10 4

2

10

3

10

4

2

10

3

10

4

2

10

10

10

3

10

4

10

10

10

3

10

4

10

0.0222

10

10 2

10 2

10 4

10 3

10 4

0.262

C3AR

10 3

0.308

10 5

10 5

5

5

5

5

10 5

10 5

CD337 (NKp30)

10

2

5

5

10 5

CD307d (FcRL4)

10

5

10 5

10

0.0888

CD282 (TLR2)

10

0.281

CD266 (Fn14)

10

29.3

CD243

10 2

10 4

0.176

10 3

0.171

10 3

CD69

CD85d (ILT4)

10 2

10 2

5

10 5

10

0.0432

CD56 (NCAM)

10

97.4

CD49a

10

10 2

10

2

10 2

10

0.0445

5

3

0

10

2

10

3

0

10

4

10

5

Ig light chain κ

0

10 2

10

10 4

10

erbB3/HER-3

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

2

3

10

4

2

10

4

10 4

10

3

10

100

4

CD41

10 3

0

CD28

10

3

0.592

10 4

CD15

10 3

3

10

4

10 4

10 3

10 4

2

10

3

10

4

2

10

3

10

4

10

2

10

10

3

10

4

0

0

0

0

10 5

10

10

10

10

3

10

4

10

0.0431

10 4

10 3

10 4

0.066

C5L2

10 3

10

2

10

3

10

4

10

5

10 5

10 5

0.0446

FcεRlα

10 2

10 2

0.624

5

5

5

5

10 5

CD338 (ABCG2)

10

2

5

5

10 5

10

0.0435

CD284 (TLR4)

10

0.132

CD267 (TACI)

10

0.11

CD244 (2B4)

10 2

10 4

5

10 5

10

0.0435

10 3

0.107

10 3

CD70

0.388

CD57

10

5

10 5

0.0641

CD85g (ILT7)

10 2

10

0.0861

CD5

10

CD49c

2

10 2

10

10

10 2

10

2

10 2

10

CD314 (NKG2D)

0

0

0

0

0

0

0

0

0

0

0

0

0.0437

Ig light chain λ

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

2

3

10

4

10

4

2

10

3

10

4

2

3

10

4

10 2

10

10 4

10 4

10 3

10 4

43.4

10 3

5

5

5

10 5

10

10

10 5

10 5

10 5

0.0852

10 3

CD71

95.9

CD58

10

CD85h (ILT1)

10 2

10 2

10

99.8

CD49d

10

10 4

71.3

10 3

5

10 5

10

0.0662

CD29

10

3

100

10 4

CD16

10 3

0.088

CD6

10

CD42b

10 2

10

2

10 2

10

10

2

10

3

10

4

10

0

0

0

0

0

0

2

10

3

10

4

2

10

3

10

4

10

3

10

4

10 3

10 4

10 3

10 4

10

2

3

10

IgD

10

4

0.169

FcRL6

10 2

69.9

CCR10

10 2

0.308

CD340 (erbB2)

10

2

18.5

CD317

10

0.176

CD286 (TLR6)

10

0.044

5

5

5

5

10

5

10 5

10 5

10

10

10

CD268 (BAFF-R)

0

0.0221

CD245 (p220/240)

0

0

0

0

0

0

0

0

0

0.174

4

10 3

10

10 5

4

5

2

5

2

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

2

3

10

4

10

4

10

3

10

100

4

10 4

CD43

10 3

0.274

CD30

10

3

0.044

10 4

CD18

10 3

0.177

CD7

10

2

10

4

10 4

10 3

10 4

2

10

3

10

4

10

3

10

4

2

10

3

10

4

99.5

CD290

2

10

2

10

3

10

4

24.5

5

5

10

10

10

10

5

5

5

5

10 5

10 5

10 5

10

10

CD318 (CPCD1)

10

10

5

10 5

10

0.0219

CD270 (HVEM)

10

0.663

5

10 5

10

CD252 (OX40L)

10 2

10 4

0.568

10 3

0.28

10 3

CD73

100

CD85j (ILT2)

10 2

3

CD59

10

100

CD49e

2

10 2

10

10

10 2

10

2

10 2

10

10 2

10 3

10 4

10 5

10 2

10 3

10 4

10 5

0

10

2

3

10

IgM

10

4

10

0.0422

5

Galectin-9

0

0.463

CLEC12A

0

0.0646

CD344 (Frizzled-4)

0

0

0

0

0

0

0

0

0

0

0

0

0

0.192 10

10

3

4

10 5

4

5

2

5

4

5

2

3

4

5

2

2

4

2

3

4

5

2

5

3

0

10 2

10

10 4

10

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10

0

10

2

10 3

10 4

10 5

0

10

10 3

10 4

10

5

0

10 2

10 3

10

10

0

10 2

2

2

2

3

10

4

10

4

3

10

4

3

10

4

10 4

10 3

10 4

2

10

3

10

4

10

10

10

3

10

4

2

10

3

10

4

0.237

CD294

2

0.087

CD271

10

78.2

CD253 (Trail)

10 2

10 4

0.154

10 3

5

5

5

10 5

10

10

10 5

10

5

10 5

10

10

10

10

10

10

4

10

10 4

10 2

10 4

8.8

10 3

5

10 5

10 5

CLEC9A

10 3

0.0879

CD351

10 2

10

3

0

2

3

10

4

10

0.0844

10

IL-28RA

10

5

GARP (LRRC32)

0

0

0

2

0.0866

5

5

5

10 5

10 5

0.0211

10 3

CD74

0.172

CD61

10

29.3

CD49f

10

99.6

10 4

CD44

10 3

99.9

CD31

10

3

0.238

10 4

CD19

10 3

0.15

CD8a

10

CD85k (ILT3)

10 2

10 2

10

10

10 2

10

2

10 2

10

CD319 (CRACC)

0

0

0

0

0

0

0

0

0

0

0

0

0.0878

5

2

3

4

5

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

0

0

0

0

0

0

2

2

10

4

10

3

10

4

2

10

3

10

4

2

10

3

10

4

5

4

5

4

5

2

0

10

5

4

2

3

10

4

10 5

5

10 3

10 4

10 5

10 2

10 3

10 4

10 5

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

10 2

10 3

10 4

10

10

3

10

4

10

Ms IgG1, κ ITCL

0

2

0.191 5

10 5

TCR Vδ2

0

0

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10

10

10 5

0

Siglec-10

0

0.3

0

0

0

10

3

10

4

10

3

10

4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

4

0.172

CD201 (EPCR)

10

53.5

5

5

5

5

5

5

10

10

10 5

10 5

10

10

CD179b

10

10 4

0.108

10 3

CD163

10 2

10 4

0.108

10 3

CD150 (SLAM)

10 2

0.156

CD134

10

10

0.0672

CD115

10

2

0.262

10

10 5

0

10 2

10 3

10 4

1.02 10 5

10 2

10 4

10 3

10 4

0.111

10 3

Siglec-8

10 2

10

10

3

10

4

10

5

10 5

10 5

Ms IgG2a, κ ITCL

0

2

0.129

TCR Vγ9

0

0

0.0876

MSC and NPC (W4A5)

10 2

3

4

2

10 4

CD101 (BB27)

10

0

10 3

CD86

10 2

0.11

Integrin α9β1

0

10 2

10

10

10 5

10 4

MSC (W7C6)

10 3

10

0

40.1

Blank

10

2

10 2

10 2

10

5

10 3

10 4

10

10

0

0

0

0.0438

10 2

10 3

10 4

10 5

0

2

10 3

10 4

10

10

10

CD200 R

3

3

0

10

10

0

10

0

0

0

0

0

0

: FITC-A

10 3

10

10

0

2

10 3

10

10

10

4

10

5

2

3

4

5

0

10

10

10

10

10 5

2

10

10 5

2

3

4

5

0

10

10

10

10

0

2

3

4

10 2

3

10

10 5

5

5

10

10

10

10

5

0

10 2

10

10

0.191

CD179a

10

10 4

0.279

10 3

CD162

10 2

10 4

0.0849

10 3

CD148

10 2

10

10

0.0895

CD132

10

0.111

CD114

10

2

0.11

10

3

4

5

10 2

10

10

10

0

2

4

0

0

3

5

10 5

5

10 3

10 4

10

10

10 5

0

10

10

CD100

10

10 4

0.0888

10 3

0.11

Blank

10 2

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

10

10

10

5

0

10 2

10

10

10

0

10

10 3

10 4

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

0

0

0

0

0

0

2

2

3

4

5

2

3

4

4

2

10

4

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

10

2

10

3

10

4

0.252

10

5

5

10 5

CD180 (RP105)

10

10 4

5

5

5

10 5

10

0.0648

10 3

CD164

10 2

10 4

93.9

10 3

CD152

10 2

0.066

CD135

10

10

0.0883

CD116

10

2

0.247

10

10

2

10

3

10

4

10

5

0

0

0

10 3

10 4

10 2

10 4

10 5

10 5

10 3

10 4

10 5

0.0671

10 3

Siglec-9

10 2

0.087

MSCA-1 (MSC)

10 2

8.75

Integrin β5

0

99.2

CD202b (Tie2/Tek)

0

0

3

10 5

2

0

10

10 3

10 4

10

5

10

10

3

10

4

10

5

Ms IgG2b, κ ITCL

0

2

0.0898

TCR Vα24-Jα18

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

0.261

10 4

CD87

10 3

0.107

CD102

10

10 2

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

0

0

0

0

0

0

2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

3

10

4

10

3

10

4

2

10

3

10

4

10

2

10 4

10

3

10

4

0.172

10 3

CD165

10 2

10 4

99.2

10 3

CD154

10 2

10

10

10

2

10

3

10

4

10

2

10

3

10

4

10

10 3

10 4

10 2

10 4

10 5

10 5

10 3

10 4

10 5

0.0443

10 3

SSEA-1

10 2

0.021

NKp80

10 2

10

10

3

10

4

10

5

Ms IgG3, κ ITCL

0

2

0.0672

TCR Vα7.2

0

0

0

0.111

Integrin β7

0

0.175

5

5

10

5

10 5

CD203c (E-NPP3)

0

0.213

5

5

5

10 5

0.0667

CD137 (4-1BB)

10

10

0.0877

CD117 (c-kit)

10

2

0.0658

10

10 5

CD181 (CXCR1)

0

10

0.109

10 4

CD88

10 3

0.238

CD103

10

10 2

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

0

0

0

2

10

3

0

10

4

10 4

CD89

10 3

10

2

10

3

10

4

0.462

CD104

10

10 2

10

10

5

5

10 5

0.0441

2

3

4

5

2

3

4

5

4

5

2

4

5

10

2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

3

10

4

0.176

10

5

0

0

10

2

10

3

10

4

10

10

2

10

3

10

4

10

5

10

2

10

3

10

4

10

10 3

10 4

10 3

10 4

10

2

10

3

10

4

0.234

TCR α/β

10 2

10 4

10 5

10 5

10

5

10 5

0.0223

10 3

SSEA-3

10 2

3.51

Notch 1

10 2

5

Ms IgM, κ ITCL

0

0

0

0

0.0642

Jagged 2

0

0.125

CD205 (DEC-205)

0

0.107

5

10 5

CD182 (CXCR2)

0

10 4

10 5

0.0442

10 3

CD166

10 2

10 4

98.8

10 3

CD155 (PVR)

10 2

98.1

CD137L (4-1BB L)

0

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

CD119 (IFN-γRα chain)

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

3

10

4

10

3

10

4

2

10

3

10

4

10 2

0

5

10 5

10

10

5

5

2

10

3

10

4

2

10

3

10

4

2

3

10

4

10 3

10 4

95.1

LAP

10

10

2

10 2

10 4

10 4

10

3

10

4

5

5

5

10

5

10 5

10 5

10 5

10

10

0.0855

10 3

Tim-1

0.045

10 3

SSEA-4

10 2

98.8

Notch 2

10 2

10

2.33

CD206 (MMR)

10

10

0.0214

CD183

10

10 5

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

3

10

4

0.646

10 4

CD93

10 3

10

3

10

4

2

10

3

10

4

10

10

10

10 2

0

10 5

10

2

10

3

10

4

10

10

2

10

3

10

4

10

5

2

10

3

10

4

10 3

10 4

10 4

10

2

10 2

10 5

10 4

10

3

10

4

10

5

10 5

0.0441

10 3

Tim-3

5

10 5

10

0.0219

10 3

SSEA-5

10 2

0

Notch 3

10 2

0.131

LT-β R

10

Rat IgG2a, κ ITCL

0

0

0

0

0

81.5

CD207 (Langerin)

0

0.107

5

10 5

CD184 (CXCR4)

0

10 4

0.201

10 3

CD169

10 2

10 4

0.0649

10 3

0.177

5

5

5

10 5

CD140a

10

0.262

CD123

10

2

0.132

CD106

10

10 2

0.133

CD158a/h

0

0

0

0

0

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

Figure S2

Rat IgG1, κ ITCL

0

0

0

0

0

0

0

10 4

0.349

10 3

CD167a (DDR1)

10 2

10 4

0.26

10 3

97.8

CD138

10

2.64

CD122

10

2

10

10 5

0.0441

CD105

10

10 4

100

10 3

CD90 (Thy1)

10 2

100

CD156c (ADAM-10)

0

0

0

0

0

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

10

2

10 2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

3

10

4

54.4

10 4

CD94

10 3

0.264

10

10

10

4

2

10

3

10

4

10

10

10 2

10 4

2

10

3

10

4

10

2

10

10

3

10

4

10

0.0429

CD193 (CCR3)

10

5

5

10 5

10 5

5

5

10

2

10

3

10

4

10

5

10 3

10 4

10 3

10 4

10

2

10 2

10 4

10

3

10

4

10

5

10 5

10 5

10 5

0.0642

10 3

Tim-4

0.109

TCR γ/δ

10 2

0.133

Notch 4

10 2

Rat IgG2b, κ ITCL

0

0

0

0

0.352

Mac-2 (Galectin-3)

0

0.295

CD209 (DC-SIGN)

0

0

10 4

0.265

10 3

0.197

10 3

CD158b (NKAT2)

10 2

0.0668

CD140b

10

0.554

CD124

10

3

CD170 (Siglec-5)

0

0

0

0

2

0.223

5

10 5

CD107a (LAMP-1)

0

0

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

0

0

0

0

0

0

2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

3

10

4

10

3

10

4

10

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10 3

10 4

10 2

10 3

10 4

0.132

NPC (57D2)

10 2

0.378

MAIR-II

10

0.255

CD210 (IL-10R)

10

0.243

CD195 (CCR5)

10

10 4

0.712

10 3

CD172a (SIRPα)

10 2

10 4

99.5

10 3

5

5

5

10 5

10

10 5

10 5

5

5

5

10

10

10

10 5

CD158d

10 2

0.09

CD141

10

92.8

CD126 (IL-6Rα)

10

2

0.086

10

10 5

10

2

10 2

10 4

10

3

10

4

0.107

10 3

TLT-2

10

5

10 5

Rat IgM, κ ITCL

0

0

0.152

TCR Vβ13.2

0

0

0

0

0

10

97.9

10 4

CD95

10 3

99.5

CD108

10

10 2

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

2

2

3

4

5

2

3

4

4

2

2

0

10

10 3

10 4

10

5

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

3

10

4

91.4

10 4

CD96

10 3

10

3

10

4

10

2

10

3

10

4

10 2

10

0

5

5

5

2

10

3

10

4

10

2

10

3

10

4

39.6

CD196

10

10 5

10

10

10

2

10

3

10

4

10

5

10 2

10 3

10 4

10 5

10 2

10 3

10 4

10 5

0

10 2

0

2

10

3

10

4

0.196

10 4

10

5

10 5

AH IgG, ITCL

10

10 3

TRA-1-60-R

0.0646

TCR Vβ23

0

0.132

Podoplanin

0

32

MICA/MICB

0

0.877

5

5

10 5

CD213a2

0

0

10 4

0.456

10 3

CD172b (SIRPβ)

10 2

10 4

0.0433

10 3

0.0441

CD143

10

1.07

CD127 (IL-7Rα)

10

2

10

10 5

0.0445

CD109

10

10 2

0.11

CD158e1 (NKB1)

0

0

0

0

0

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

0

0

0

0

0

0

2

2

3

4

5

2

3

4

4

2

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

3

10

4

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

4

0.432

CD197 (CCR7)

10

10 4

0.28

10 3

5

5

5

10 5

10

10

2

10

3

10

4

10 3

10 4

10 5

10 2

10 3

10 4

10 5

0.0221

Pre-BCR

10 2

10

0.0876

MSC (W3D5)

10

10 2

10 3

10 4

10 5

TRA-1-81

0

0.222

TCR Vβ8

0

0

0

11.5 5

5

5

10 5

CD172g (SIRPγ)

10 2

10 4

10

10

0.0856

10 3

CD158f

10 2

0.169

CD144

10

0.267

CD129 (IL-9R)

10

2

0.156

10

10 5

CD215 (IL-15Rα)

0

0

10

31.9

10 4

CD97

10 3

63.4

CD111

10

10 2

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

5

3

4

5

10

10

10

2

3

4

2

3

4

5

2

3

4

5

4

5

2

4

5

10

2

10 2

2

3

4

5

2

3

4

4

2

0

10

10 3

10

10 5

0

10 2

10

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

3

10

4

99.4

10 4

CD99

100 10 3

10

5

10 5

0

0

0

0

10

4

2

3

10

4

94.6

10

2

3

10

4

0.149

10

10

2

10

3

10

4

0.235

CD200 (OX2)

10

10 4

0.192 10 3

CD178 (Fas-L)

10 2

10 4

CD161

10 3

0.085

CD146

5

5

10

10

2

3

10

4

13.7

10

10 2

10

10 4

10 4

0.13 10 3

10 5

10 5

0.0663 10 3

PSMA

10 2

MSC (W5C5)

10

10 2

10 4

10 5

0.0855 10 3

TSLPR (TSLP-R)

0

TCR Vβ9

0

0

0

5

5

5

10 5

10 5

10

10

CD218a (IL-18Rα)

0

0

3

0.238

10

CD131

2

10 2

10

10

CD112 (Nectin-2)

0

0

: FITC-A

10 3

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10

10

10

10

0

10

5

0

10 2

10

10

10

0

2

10 3

10 4

10

10

10 2

10 3

10 5

10 4

10 5

10 2

0

10

10

3

10 2

10 3

10 3

5

2

10 5

2

3

4

5

10 5

10

10 4

10

2

10

3

5

2

10

5

10

3

10

4

2

5

2

2

3

4

5

2

10

3

10

4

10

5

2

10

3

10

4

10

2

10

3

10

10

4

10

0.149

CD352 (NTB-A)

10

10

10

10

HLA-A,B,C

10

0

0

5

10 2

4

3

0

10

10 2

3

2

3

4

5

0

10

10

10

10

0

2

10 4

3

2

5

10 5

10

90.2

5

5

10

10 3

10 4

10

10 4

CX3CR1

0

0

0.128

2

0

10

10 3

10 5

0

10

10

10

10

0

10

10 3

10 4

10

10

CD324 (E-Cadherin)

0

10

10 3

10 4

5

0.0636

10

2

10 4

0

2

CD298

10

5

0

10

10 3

10 4

10

10 5

0

100

10 5

0

10

10 3

10 4

10

4

CD273 (B7-DC)

10

0

3

4

10 2

10

10

0

3

4

10 2

10

10

6.22

2

3

0

10

10

10

10 5

0

10 3

2.19

CD254

10 2

10

10 5

0

10

10

10

0

3

Blank

10

4

2

2

0

10

10 5

10

5

10 3

10 4

10

4

0

0.13

10 5

0

10

10 3

10 4

10

10 4

CD79b

0

10 2

2

10 3

10

3

10

4

10 2

10 3

10 4

2

10

3

10

4

10

2

10

3

10

10

4

10

2

10

3

10

4

10

2

10

3

10

4

1.54

CD325

10

10

10

5

5

0

0

2

10

3

10

4

10

3

10

4

HLA-A2

10

2

10

10

0.214

CXCR7

10

0.958

5

5

CD354 (TREM-1)

0

0

1.69

5

0.0643

CD274 (B7-H1)

10

CD300e (IREM-2)

0

0

20.2

5

10 5

0.214

5

10 5

10

0.472

10 4

CD80

CD220

10

10 2

CD255 (TWEAK)

0

0

0

0

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0.215

10 4

10 2

10 3

10 5

10 3

0

0

10 3

CD62L

10 2

10 5

0.0853

10 4

CD51

10 3

0

10

2

10 3

10 4

10 5

10 4

0

10 2

99.8

0

10 5

10 2

1.13

10 5

10 2

10 3

10 4

10 5

CD62E

10 4

10

5

10 4

10 3

0

10 3

10

4

10 2

10 3

10 4

10

5

10 4

0

10 2

10

3

10 5

0.128

10 4

CD33

10 3

CD45RA

10

2

10 2

10 5

0

0

0

0

10 2

10 3

10 5

10 2

0

10 5

0.106

10 4

CD50 (ICAM-3)

0

0

10

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

0.0647

10 5

2

10 3

10 4

10

5

10 5

CD45

10

4

0

2

0

10 3

10 4

10

5

10 2

0.0432

10 5

10 2

10 3

10 4

10

5

10 4

CD32

10 3

0

0

10 2

10 3

10 4

10 5

0.238

10 4

CD21

10 3

10 4

0

0.173

10 2

10 5

0

0

10 2

10 5

10 2

10 3

10 4

10 5

CD20

10 3

10 4

10 3

10 5

10 3

0

10 2

10 5

0.106

10 4

CD10

10 3

10 4

0

0

10 2

0

10 2

10 3

10 5

10 2

0

0

39.1

10 5

10 4

10 3

10 2

10 3

10 4

10 5

10 4

CD9

10 3

10 4

CD1a

10 3

10 4

0

10 2

10 2

10 5

10 2

0

0

0

10 2

10 5

0

99.2

10 5

10 2

10 3

10 4

10 5

Blank

10 4

0

0

10 4

10 3

10 5

0.105

10 4

10 3

10 5

0

0.0855

10 2

10 3

10 4

10 5

10 2

10 4

10 3

10

3

10

4

0.15

10 4

CD34

10 3

10 5

10 5

10

10 2

10 3

10 5

10 2

10 3

10 5

10

2

10 2

10 3

10

3

10

4

2.37

10 4

CD81

10

10 3

10 4

2

10

3

10

4

2

10

3

10

4

10

10

2

10

3

10

4

10

0.424

CD300F

10

10

5

5

5

10 5

0.255

CD275 (B7-H2)

10

3.65

CD257 (BAFF)

10 2

10

2

10

3

10

4

10

10

2

10

3

10

4

10

0

10

3

10

4

10

HLA-DQ

10

2

5

5

5

0.0859

δ-Opioid Receptor

0

0.148

CD355 (CRTAM)

0

0.278

CD326 (Ep-CAM)

0

0

0

0

0.856

5

10 5

CD221 (IGF-1R)

0

0

99.9

10 4

CD62P (P-selectin)

0

0.17

10 4

97.1

5

10 5

0.303

10 4

CD22

10 3

0.15

10 4

CD45RB

10

2

10 2

10 2

10 5

0.0845

CD1b

10 3

CD11a

10 2

10 2

CD51/61

0

0

0

0

0

0

0.169

10 3

10 4

10 5

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 4

10 3

10

2

10 2

10 2

10

3

10 5

10

4

10

10

2

10 2

10 2

10 2

10 3

10

3

10

4

10

5

10 5

10 5

10 5

0.192

10 4

CD82

17.7

10 4

CD63

10 3

99.6

10 4

CD52

10 3

10 3

10 4

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

10

5

5

10 5

10

4

10

5

0.0211

CD301

10

4.74

CD276

10

100

CD258 (LIGHT)

10 2

0

0

0

2

10

3

10

4

2

2

3

10

4

10

3

10

10

4

10

0.043

DLL1

10

HLA-DR

10

10

10

5

5

5

0.0425

CD357 (GITR)

10

0.989

CD328 (Siglec-7)

0

0

0

0

0.194

CD226 (DNAM-1)

0

0

0

0

0.107

5

10 5

0.127

10 4

0.0649

10 4

CD35

10 3

10 5

0.0853

10 4

CD23

10 3

10 5

0.277

CD1c

10 3

CD11b

10 2

10 2

CD45RO

0

0

0

0

0

0.105

10 3

10 4

10 5

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 2

10 2

10 4

10 3

10 5

0

0

0

0

0

0

0

0

0

0

0

0

0

0

2

10

4

10

3

10

4

10 3

10 4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

4

2

2

3

10

4

10

3

10

10

10

4

10

0.215

DLL4

10

HLA-E

10

10

1.71

CD360 (IL-21R)

10

21.8

CD334 (FGFR4)

10

10

0.107

CD303

10

10

5

5

5

5

5

5

10 5

0.172

CD277

10

17.6

CD261 (DR4)

10 2

0.194

10

5

10 5

0.107

10 4

CD83

10 3

10 5

0.732

10 4

CD64

10 3

10 5

10

5

10 5

0.234

10 4

CD53

10 3

0.3

CD46

10

3

45.5

10 4

CD36

10 3

10 5

10 5

0.259

10 4

CD24

10 3

CD229 (Ly-9)

10

10 2

10 2

10 2

10

2

10 2

10 2

46.1

10 4

0.875

CD1d

10 3

CD11b (activated)

0

0

0.105

10 3

10 4

10 5

5

2

2

3

4

3

4

5

2

2

5

2

10 4

10 3

10 2

10 2

10

2

10 2

10 2

10

4

99.8

10 4

10 3

10 5

10

0

0

0

0

0

0

0

2

10 3

10

3

10

4

10 3

10 4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

10

2

10

3

10

4

99.9

10

CD335 (NKp46)

10

10

10

0.106

CD304

10

88

CD278 (ICOS)

10

5

5

5

5

10 5

0.107

CD262 (DR5)

10 2

81.9

10

5

10 5

0.341

10 4

CD84

CD231 (TALLA)

10

10 2

10 5

0.323

10 4

5

10 5

0.215

10 4

CD54

10 3

11.4

CD47

10

3

10 5

0.195

10 4

CD38

10 3

10 5

0.129

10 4

CD25

10 3

10 5

0.128

CD2

10 3

CD11c

10 2

10 2

CD66a/c/e

0

0

0

0

0

0

0

0.0629

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

10

2

10

3

10

4

10

0

10

3

10

4

HLA-G

10

2

10

0.193

DR3 (TRAMP)

0

0.17

5

5

β2-microglobulin

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

10 4

10

4

10 3

10 3

10

2

10

3

10

4

10

0

0

0

0

0

0

0

10 3

10 4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

10

10

10

3

10

4

10

3

10

4

99.2

BTLA

10

2

10

3

10

10

10

4

10

0.577

EGFR

2

2

0.234

CD336 (NKp44)

10

10

0.214

CD307

10

10

5

5

5

5

5

5

10 5

0.107

CD279 (PD-1)

10

0.15

CD263 (DcR1)

10 2

0.493

5

10 5

10 5

0.214

10 4

0.13

10 4

CD85a (ILT5)

10 2

10 5

10

5

10 5

0.128

10 4

CD55

10 3

86.4

CD48

10

3

0.28

10 4

CD39

10 3

10 5

10 5

10 5

0.108

10 4

CD26

10 3

60.4

10 4

CD13

10 3

100

CD3

10 3

CD66b

10 2

10 2

10

2

10 2

10 2

10 2

10 2

CD235ab

0

0

0

0

0

0

0

0

0

0.0845

IFN-γ R β chain

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

10 3

10 4

10 5

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

0

0

0

0

0

0

0

0

0

0

0

0

0

0

0

10 4

10

3

10

4

87.2

10 4

CD40

10 3

10 3

10 3

2

10

3

10

4

10 3

10 4

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

4

10

10

10

2

2

3

10

4

10

3

10

10

4

10

0.215

C3AR

10

0.256

CD337 (NKp30)

10

0.214

CD307d (FcRL4)

10

10

5

5

5

5

5

0.0427

CD282 (TLR2)

10

10 5

0.257

CD266 (Fn14)

10 2

40.3

10

5

10 5

0.238

10 4

CD243

10

10 5

0.215

10 4

CD69

10 3

10 5

0.0631

10 4

CD85d (ILT4)

10 2

10 2

10

5

10 5

0.769

CD56 (NCAM)

10 2

10 5

0.581

10 4

CD27

10 3

10 5

0.172

10 4

CD14

10 3

10 5

0.0637

CD4

10 3

CD49a

10

2

10 2

10 2

10 2

10 2

0.105

3

0

10

2

10

3

10

4

10

5

0.0646

Ig light chain κ

0

10 2

10

10 4

10 5

erbB3/HER-3

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

10 4

10

3

10

4

89.1

10 4

CD41

10 3

10 3

2

10

3

10

4

10 3

10 4

2

10

3

10

4

10

2

10

3

10

10

4

10

0.259

CD284 (TLR4)

10

0

0

0

0

2

10

3

10

4

10

2

2

3

10

4

10

3

10

2

10

3

10

10

4

10

4

10

0.107

10

0.234

C5L2

10

FcεRlα

10

10

0.725

CD338 (ABCG2)

10

0.151

5

5

5

5

5

5

10 5

0.279

CD267 (TACI)

10 2

0.0857

10

5

10 5

0.108

10 4

CD244 (2B4)

10

10 5

10 5

0.0214

10 4

CD70

10 3

18.4

10 4

CD57

10 3

10

5

10 5

0.0857

CD85g (ILT7)

10 2

10 2

10 2

10 5

0.108

10 4

CD28

10 3

10 5

0.646

10 4

CD15

10 3

10 5

0.107

CD5

10 3

CD49c

10

2

10 2

10 2

10 2

10 2

CD314 (NKG2D)

0

0

0

0

0

0

0

0

0

0

0

0

0.0628

Ig light chain λ

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

10 3

10 4

10 5

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 4

10 3

10

3

10

4

90.1

10 4

10 3

10

2

10

3

10 5

10 5

10

10

4

94.8

10 4

5

10 5

10

5

10 5

0.129

10 4

CD71

10 3

89.7

10 4

CD58

10 3

CD85h (ILT1)

10 2

10 2

10 2

99.7

CD49d

10

2

10 5

10 5

0.172

10 4

CD29

10 3

100

10 4

CD16

10 3

10 5

0.0851

CD6

10 3

CD42b

10 2

10 2

10 2

10 2

10 2

10 3

10 4

10 5

0

0

0

0

0

0

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

IgD

10

3

10

4

10

0.192

FcRL6

10

10

10

10

10

0.257

CCR10

10

0.47

CD340 (erbB2)

10

38.2

CD317

10

2.63

CD286 (TLR6)

10

0.151

5

5

5

5

5

5

CD268 (BAFF-R)

0

0.171

CD245 (p220/240)

0

0

0

0

0

0

0

0

0

0.147

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

10 4

10

3

10

4

100

10 4

CD43

10 3

0.28

10 4

CD30

10 3

2

10

3

10

4

1.95

10 4

10

10 3

10 4

2

10

3

10

4

10

2

10

3

10

4

25.4

CD290

10

10

10

10

2

10

3

10

4

10

5

10

2

10

3

10

4

10

5

10

2

10

3

10

4

10

5

0

10

2

10

IgM

10

3

4

10

5

0.0214

Galectin-9

0

0.469

CLEC12A

0

0.106

CD344 (Frizzled-4)

0

1.2

5

5

10 5

0.235

CD270 (HVEM)

10 2

2.85

5

10 5

CD252 (OX40L)

10

10 3

10 5

10 5

10

5

10 5

10 5

0.214

10 4

CD73

10 3

100

10 4

CD59

10 3

100

CD85j (ILT2)

10 2

10 2

10 2

10 5

0.043

10 4

CD18

10 3

10 5

0.0639

CD7

10 3

CD49e

10

2

10 2

10 2

10 2

10 2

CD318 (CPCD1)

0

0

0

0

0

0

0

0

0

0

0

0

0.189 10 3

10 4

10 5

5

2

2

3

4

3

4

5

2

2

5

2

2

3

4

5

3

0

10 2

10

10 4

10 5

0

10

10

10

10

0

10

10 3

10 4

10

0

10

10 3

10 4

10 5

0

10

10 3

10 4

10

0

10 2

10

10

10 5

0

10

10

10

10 5

0

10

10 3

10 4

10

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

2

10 3

10 4

10 5

0

10 2

10 3

10 4

10

5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10 2

10 4

10

3

10

4

78.5

10 4

CD44

10 3

100

10 4

CD31

10 3

10 3

2

10

3

10

4

10 3

10 4

2

10

3

10

4

10

2

10

3

10

10

4

10

0.281

CD294

10

5

5

5

10 5

10

10 5

10 5

0.281

CD271

10 2

42.8

CD253 (Trail)

10

0.15

10 4

0.15

10 4

CD74

10 3

CD85k (ILT3)

10 2

10 2

10 5

10

5

10 5

10 5

0.237

10 4

45.4

CD61

10 3

10 5

0.992

10 4

CD19

10 3

10 5

0.0854

CD8a

10 3

CD49f

10 2

10

2

10 2

10 2

10 2

10 2

10

3

10

4

2

10

3

10

10

4

10

0.129

CD351

2

10

2

10

3

10

4

65.1 10

CLEC9A

10

10

5

5

5

0

10 3

10 4

10 5

0.235

IL-28RA

10 2

GARP (LRRC32)

0

0

0

0.15

CD319 (CRACC)

0

0

0

0

0

0

0

0

0

0

0

0

0.0426 2

3

4

5

3

10

4

2

3

0

10

3

5

4

3

10

4

5

10

10

3

2

3

4

5

2

10

3

10

4

10 2

10 3

4

2

3

4

5

4

5

2

2

3

4

5

2

2

3

10

4

10

3

10

4

11.8

Blank

10

10

2

10

3

10

10

10

4

10

0.129

MSC (W7C6)

10

10

10 2

10 3

10 4

10

3

10

4

10

5

Ms IgG1, κ ITCL

2

3

10

4

2

10

3

10

4

2

10

3

10

4

10

3

10

4

2

10

3

10

4

10 2

10 3

10 3

10

2

10

3

10

4

5.39

10 4

99.1

10 4

CD201 (EPCR)

10 2

10

5

5

5

5

10

5

10 5

10 5

0.107

CD163

10

10

0.217

CD150 (SLAM)

10

2

10

0.273

CD134

10

10

0.108

CD115

10

5

10 5

0.296

10 4

CD101 (BB27)

10 3

10

0.129

CD86

10

CD179b

0

2

10 2

10

0

10

2

10

3

10

4

1.84 10

5

4

5

2

2

3

4

5

0

10

10

10

10

0

10

10 3

10

10

2

3

0

10

10

10

10

2

10

3

10

4

10 2

10 3

10

10 4

10

2

10

3

10

4

10

0.107 5

10 5

Ms IgG2a, κ ITCL

0

5

0.0863

Siglec-8

TCR Vγ9

0

0

0.129

MSC and NPC (W4A5)

4

2

3

0

10

2

3

4

5

0

10

10

10

10

0

0

0

0

0

0

0

0

0.128

Integrin α9β1

0

10 2

4

10

10

10

0.152

4

10 3

10

10 5

10 5

0

5

5

5

10 5

TCR Vδ2

0

0.153

Siglec-10

0

0

0

0.0866

10 5

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

10 4

0

0

CD200 R

4

10 2

10 3

10

10 5

0.213

10 2

10 3

10

4

10 5

10 5

10 4

CD179a

10 3

0 10 2

10 2

0

10 3

10 4

5

10 2

10 3

0.279

10

10 4

CD162

10

2

3

4

5

0

10

10

10

10

10 5

0

0

0.194

10

5

10 5

0

10

10

10

10

CD148

10

4

0 2

4

10 3

10

10

5

0

0.281

10

10 2

0

10

10 2

10 3

10

10

5

2

CD132

10

2

0

10

10 3

10 4

2

0

10

0.302

10 4

10 3

10 5

10

10 5

0

4

CD114

10

0

0 2

10 2

10

10 4

10 3

10 5

10 2

10 3

0.171

10 5

10 4

CD100

10 4

2

3

0

10

10

10

10 5

0

10

10

10

10 3

5

4

10

0.152

Blank

10

4

0

2

10 2

10

2

3

4

5

0

10

10

10

10

10 5

0

0

0.0431

10 5

0

10

10

10

10

2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

3

10

4

2

10

3

10

4

2

10

3

10

4

10

3

10

4

2

10

3

10

4

10 2

10 3

10

10

10 2

10 3

10 5

10 5

5

5

5

5

10

2

10

3

10

4

10

5

0

0

0

2

10

3

10

4

2

10

3

10

4

10 2

10 3

10

10 4

5

5

10 5

0.108

Siglec-9

10

10

0.0853

MSCA-1 (MSC)

10

32.1

Integrin β5

0

99.1

10 4

3.31

10 4

0.147

CD164

10

99.7

CD152

10

2

10

0.126

CD135

10

10

0.087

CD116

10

5

10 5

10

0.451

10 4

CD102

10 3

4.8

CD87

10

CD180 (RP105)

0

2

10 2

10

CD202b (Tie2/Tek)

0

0

0

0

0

0

0

0.15

2

3

4

0

10

10

10

10 5

10

2

10

3

10

4

10

5

Ms IgG2b, κ ITCL

0

0.106

TCR Vα24-Jα18

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

0

2

3

10

4

10 3

2

10

3

10

4

2

10

3

10

4

10

3

10

4

2

10

3

10

4

99.4

10 2

10 3

10 2

10 3

10

2

10

3

10

4

10

5

2

10

3

10

4

2

10

3

10

4

10 2

10 3

10

10 4

5

5

10 5

0.278

SSEA-1

10

10

0.149

NKp80

10

10

2

10

3

10

4

10

5

Ms IgG3, κ ITCL

0

0.15

TCR Vα7.2

0

0

0

0.171

Integrin β7

0

10 5

0.128

10 4

CD203c (E-NPP3)

0

0.322

10 4

5

5

5

5

10 5

10

10

0.211

CD165

10

10

0.064

CD154

10

2

10

0.259

CD137 (4-1BB)

10

5

10 5

0.107

10 4

CD117 (c-kit)

10

10

0.172

CD88

10

CD103

10 2

10

CD181 (CXCR1)

0

0

0

0

0

0

0.191 2

3

4

5

2

3

4

0

0

0

2

3

10

4

10 3

10

2

10

3

10

10

4

5.71

10 4

5

10

5

10 5

0.107

CD89

10

CD104

10 2

10

0.086

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

10

2

10

3

10

4

10

5

10

10

4

2

10

3

10

4

10 2

10 3

10

10

10 2

10 3

10 5

10

2

10

3

10

4

10

2

10

3

10

4

2

10

3

10

4

10 3

10 4

10

2

10

3

10

4

5

5

10

5

10 5

10

0.471

TCR α/β

10 2

0.17

SSEA-3

10

10

0.279

Notch 1

10

5

Ms IgM, κ ITCL

0

0

0

0

0.149

Jagged 2

0

0.195

10 4

10 5

5

5

CD205 (DEC-205)

0

0.15

10 4

0.192

CD166

10

99.6

CD155 (PVR)

10

3

CD182 (CXCR2)

0

0

0

2

99.7

CD137L (4-1BB L)

0

0.429

CD119 (IFN-γRα chain)

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

4

98.2

CD138

10

1.13

CD122

10

5

10

10

10

5

5

5

10 5

10

0.043

10 4

CD105

10 3

100

CD90 (Thy1)

2

10 2

10

2

10

3

10

4

10 3

10 3

2

2

3

10

10

3

4

10

4

97.3

LAP

10

2

10

3

10

4

10

2

10 2

10 4

10

3

10

4

5

5

5

10

5

10 5

0.213

Tim-1

10 3

10

10

10

10 5

0.235

SSEA-4

10

63.1

Notch 2

10

10

32.7

10 4

CD206 (MMR)

10 2

5

10 5

10

0.151

10 4

CD183

10 2

2.51

CD167a (DDR1)

10

2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

3

10

4

10 3

2

10

3

10

4

2

10

3

10

4

73.5 10

10

10

2

10

3

10

4

10

0.216

CD140a

10

10 5

5

5

5

5

0.0432

10 4

CD123

10

10

0.621

CD93

10

CD106

10 2

10

0.195

10

3

10

4

10 2

10 3

10 2

10 3

10 5

10 5

5

2

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

2

10 2

10 4

10

3

5

5

5

10

4

10

5

10 5

0.235

Tim-3

10 3

10

10

10

0.0859

SSEA-5

10

0.28

Notch 3

10

5.2

LT-β R

10

Rat IgG2a, κ ITCL

0

0

0

0

0

89.5

10 4

0.28

10 4

0.278

10

CD207 (Langerin)

0

2

CD169

10

CD184 (CXCR4)

0

0

0.192

CD158a/h

0

0

0

0

0

Figure S3

Rat IgG1, κ ITCL

0

0

0

0

0

0

0

0

0.62

CD156c (ADAM-10)

0

0

0

0

0

94.8 2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

10 2

10

3

10

4

10 3

2

10

3

10

4

2

10

3

10

4

10

10

10

3

10

4

10

10

2

10

3

10

4

10

0.279

CD158b (NKAT2)

10

2

0.281

CD140b

10

7

CD124

10

5

5

5

5

10 3

10 2

10 3

10 5

10

2

10

3

10

4

10

5

10 5

2

10

3

10

4

2

10

3

10

4

10

2

10 2

10 4

10

3

10

4

0.15

Tim-4

10 3

0.17

TCR γ/δ

10

0.3

Notch 4

10

5

5

10

5

10 5

10

10

Rat IgG2b, κ ITCL

0

0

0

0

0.687

Mac-2 (Galectin-3)

0

0.28

10 4

0.0858

10 4

CD193 (CCR3)

10 2

CD209 (DC-SIGN)

0

0

0.322

CD170 (Siglec-5)

0

0

0

0

5

10 5

10

0.108

10 4

88

CD94

10

CD107a (LAMP-1)

0

0

37.2 2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

3

10

4

10 3

2

10

3

10

4

10

10

3

10

4

2

10

3

10

4

0.26

CD141

2

10

10

2

10

3

10

4

10

10 3

10 3

2

10

3

10

4

2

10

3

10

4

10

2

10

3

10

10

10

4

10

0.323

NPC (57D2)

10

10 5

5

5

5

5

5

5

5

10 5

0.384

MAIR-II

10

10.6

10 4

CD210 (IL-10R)

10 2

0.171

10 4

CD195 (CCR5)

10 2

0.669

CD172a (SIRPα)

10

99.5

CD158d

10

10

28.5

CD126 (IL-6Rα)

10

5

10 5

10

0.151

10 4

97.9

CD95

10

CD108

10 2

10

10

2

10 2

10 4

10

3

10

4

0.3

TLT-2

10 3

10

5

10 5

Rat IgM, κ ITCL

0

0

0.106

TCR Vβ13.2

0

0

0

0

0

0

0

0

0

0

0

99.6 2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

2

3

4

0

10

10

10

10 5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

3

10

4

2

10

3

10

4

10

10

10

10

3

10

4

2

10

3

10

10

4

10

0.215

CD143

2

39.8

CD127 (IL-7Rα)

10

5

5

5

2

10

3

10

4

10

10 3

10 2

10 3

10 5

10

2

10

3

10

4

5

10

5

10 5

0.644

10 4

23.6

10 4

CD196

10 2

0.432

CD172b (SIRPβ)

10

0.13

10

2

10

3

10

4

10

5

2

10 2

10

3

10 3

10

4

10 4

0.15

10

5

10 5

10

0

2

10

3

10

4

10

0.302

AH IgG, ITCL

10

5

TRA-1-60-R

0

0

0.236

Podoplanin

0

30.7

MICA/MICB

0

5

10 5

10

0.151

10 4

CD109

10 3

88.7

CD96

10

CD213a2

0

2

10 2

10

CD158e1 (NKB1)

0

0

0

0

0

0

0

0.13 2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

3

10

4

10 3

10

3

10

4

10

3

10

4

2

10

3

10

4

2

10

3

10

4

10

0.259

10

10 3

10 2

10 3

2

10

3

10

4

2

10

3

10

4

10

10

2

10

3

10

4

10

0.259

Pre-BCR

10

10

10 2

10 3

10 4

10 5

0.191

5

5

TRA-1-81

0

5

0.0644

MSC (W3D5)

10

10 5

TCR Vβ8

0

0

0

90.6

10 4

5

5

5

5

10 5

0.838

10 4

CD197 (CCR7)

10 2

0.541

CD172g (SIRPγ)

10

10

0.259

CD144

2

10

0.562

CD129 (IL-9R)

2

CD158f

10

10

10

5

10 5

10

0.217

10 4

24.6

CD97

10

CD111

10 2

10

CD215 (IL-15Rα)

0

0

0

0

0

0

0

0

27.4 2

3

4

5

2

3

4

2

4

2

3

4

5

4

4

2

3

4

5

4

5

2

2

3

4

5

0

10

10

10

10

0

10

10 3

10

10

0

10

10

10

10

0

10 2

10 3

10

10 5

0

10 2

10 3

10

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10

0

10 2

10 3

10

10

5

0

10

10 3

10 4

10 5

0

10 2

10 3

10 4

10 5

0

10

10

10

10 5

0

10

10

10

10

2

10 2

10

10

3

10

4

100

10 3

5

10 5

10

3

10

4

10

3

10

4

80.3

2

10

3

10

4

10 3

10 2

10 3

10

10 5

2

10

3

10

4

90.9

10

10

2

2

3

10

3

10

10

4

10

4

10

10 2

10 3

10 4

10 5

0.278

5

TSLPR (TSLP-R)

0

5

5

0.0859

10

0.171

PSMA

10

MSC (W5C5)

10

TCR Vβ9

0

0

0

10 4

13

5

10 5

0.691 10 4

5

5

10 5

0.303

10 4

CD200 (OX2)

10 2

10

0.152

CD161

10 3

CD146

2

10

0.218

CD178 (Fas-L)

10

10

CD131

2

10 2

10

10

CD218a (IL-18Rα)

0

0

0

0

0

0

10 4

99.4

CD99

CD112 (Nectin-2)

0

0

A

B

EGFR DAPI

PAX7 Laminin

Merged

EGFR

PDGFRα

Merged

C

D

E

CD318 PAX7 Laminin DAPI

CD318 CD56 Laminin DAPI

CD318 CD56 DAPI Figure S4

CD56(+) CD56(-)

A

SSC

62.3 6.46

20K

100

80

80

% of Max

40K

100

% of Max

60K

CD56(+) CD56(-)

60

40

20

0 10 1

10 2

10 3

10 4

10 5

0 10 0

10 1

10 2

CD56

B

40

20

0 10 0

60

10 3

10 4

10 5

10 0

10 1

CD82

10 2

10 3

10 4

10 5

CD318

10 5

E 10 5

10 4

10 4

CD201

CD82

6.78 10 3

10 2

69.3

10

2

10

1

10

1

10

0

10

0

10 0

10 1

10 2

10 3

10 4

CD56(+)CD82(+)

69.5

5.97 10 0

10 5

10 1

10 2

10 3

F

CD56(-)CD82(-) 0

67.9±6.1

0

PAX7

MYOD1

Perilipin DAPI

81.1±7.0

PDGFRα(+)CD201(+)

DAPI

Figure S5

MyHC DAPI

D

CD56(+)CD82(+)

10 4

10 5

PDGFRα

CD56

C

10 3

CD56(-)CD82(-)

PDGFRα(-)CD201(-)

A

C

10

2

CD82

10

3

10

0

4

E

PAX7/GAPDH

Relative quantity

0.6 0.4 0.2 0

1 0.8 0.6 0.4 0.2

1 0.8 0.6 0.4 0.2

0

1.2 1 0.8 0.6 0.4 0.2

0

0

F 13.4

29.2

CD82(+)CD56(-)

CD82(+)CD56(+)

10 4

0

CD82(-)CD56(-)

CD82(-)CD56(+)

Negative control

1

D )C

)C MyHC

10 2 0 99.8 0

0.102 10 2

10 3

10 4

10 5

Figure S6

82 D C

(+ 82 D

C

82 C

D

10 3

56

56

56 D

4

(+

10

(+ )

0

0

D

0.0637

2

(-)

10 5

3

C

10

(-)

10

5 4

(-)

CD56

5

56

10

4

D

10

3

82

0

23.9 2

6

D

33.4

7

C

2

8

C

10

9

(+ )

3

MyHC+ area (x106 μm2)

10

10

(-)

5

10

CD82

MYOD1/GAPDH

1.2

+ CD 82 -

10

1

0.2

+ CD 8 Un 2so rt e d

10

0

0.4

1 0.8

+ CD 8 Un 2so rt e d

0

0.6

CD 82

10

Relative quantity

10 1

1 0.8

CD 82

Relative quantity

CD318

CD82(-) CD82(+)

MYOD1/GAPDH 1.2

CD 82

2

MYF5/GAPDH 1.2

Relative quantity

10

PAX7/GAPDH 1.2

+ CD 82 -

3

CD 82

10

D

Relative quantity

4

+ CD 8 Un 2so rt e d

10

CD 82

B

Supplemental Figure Legends Figure S1 (Related to Figure 1). Optimization of coating substrates and growth factors for the expansion of human muscle-derived progenitors. (A) Muscle-derived progenitors were cultured for 3 d on the indicated coating substrates. Collagen I, collagen IV, fibronectin, and laminin were used as coating substrates. Number of cells per fields was quantified and expressed as means ± s.d., n=15 fields from three independent preparations. *P