Table S6. Differentially regulated genes (up and down regulated) in the control compared with THyPRP silenced plants in FAZ at 16 h along with their expression values, fold changes, annotations, GO ids and terms. Worksheet 2 & 3 Cut off used to filter up and down regulated genes Upregulated For filtering upregulation we consider flag should be Detected in the treated sample and can be Compromised or Detected in the control sample and fold>=0.8 in the individual replicates and fold>=1 in the Geomean of treated samples. Set5 Line
Array
Details
Time
Control – New Yorker
254331010027_1_1
16h_9_AZ
16h
Control – New Yorker
254331010027_1_2
16h_10_AZ
16h
TAPG + TPRP
254331010036_1_1
16h_45_AZ
16h
TAPG + TPRP
254331010036_1_2
16h_46_AZ
16h
Treated vs. Cont
Set
Control
Downregulated For filtering downregulation we consider flag can be Detected or Compromised in the treated sample and should be Detected in the control sample and fold
