FljB amino acid UPGMA tree - PLOS

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Paratyphi C. Choleraesuis. Choleraesuis. 43:e,h:1,5. Thompson. Beaudesert. Florida. Pomona. Bredeney. Nola. Give. Schwarzengrund. Indiana. Indiana.

Strain

Serotype

SL3261 CDC1982 CDC000477 CDC000377 CDC000462 CDC010148 SPB7 SL254 SL476 84 FSLS9-102 CDC02296 1388_04 N1343_04 3474_02 CDC16 SARB7 6563/88 9520/04 48-0391 5176/85 37K RKS1263 06-5620 9519/04 6631/88 34K SARB48 SARB49 7972/93 38K 8723/97 B20 SC-B67 1435K N1258_99 ATCC7001 CH12440 CDC2532 CDC000499 CDC1498 ATCC10727 CDC2473 CDC112 CDC2206 CDC2518 CVM19633 38_05 6163_04 1370_05 CDC1863 CDC1967 ST163 CDC513 CDC1994 150_05 ATCC9270 CDC1186 CDCAr555 CDC380 ATCC9150 N2761_03 N1996_04 1/74 CDC2201 9761/07 CDC020017 CDC1428 SARB8 SARB5 2/84 98-02313 06-3890

Typhimurium Derby Stanley Muenchen Litchfield 4,12:1,2:1,2 Paratyphi B Newport Heidelburg Saintpaul uncertain (1),4,5,12:i:1,2,7 Paratyphi B var. Java Paratyphi B Paratyphi B var. Java Heidelberg Decatur Decatur Choleraesuis Kunzendorf Choleraesuis Kunzendorf Choleraesuis Kunzendorf Choleraesuis Kunzendorf Choleraesuis Kunzendorf Choleraesuis Kunzendorf Choleraesuis Kunzendorf Choleraesuis s.s. Choleraesuis s.s. Paratyphi C Paratyphi C Paratyphi C Typhisuis Typhisuis Choleraesuis Choleraesuis Kunzendorf Paratyphi C Paratyphi C Choleraesuis Choleraesuis 43:e,h:1,5 Thompson Beaudesert Florida Pomona Bredeney Nola Give Schwarzengrund Indiana Indiana Indiana Kambole Eingedi Coeln Agama Poona Agama Anatum II 42:e,n,x:1,6 IIIb 40:z39:1,6 II 17:e,n,x,z15:1,6 Paratyphi A Paratyphi A Paratyphi A Decatur Bovismorbificans Decatur Rough:r:1,5 Infantis Decatur Decatur Decatur Decatur Decatur

100

99

98

FljB amino acid UPGMA tree ST

MLST eBG

FljB Group (phase II antigens)

A (1,2)

69 635 66 133 145 246 363 630 634 68 139 90 114 146 636 147

142 142 6 6 6 6 6 6 6 6 6 20 20 20 20DLV 20DLV2

66 90

6 20

B (1,5)

C (1,5)

D (1,5)

E (1,7)

F (1,2,7) G (1,2) H (1,6) I (1,6) J (1,5) 633 637

70 67 631 186 632

141 141 144 144

K (1,5)

Supplementary Figure 7. UPGMA tree of diversity within a 440 amino acid fragment of the FljB protein.