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Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice Tamar R. Grossman a,∗ , Lisa A. Hettrick a , Robert B. Johnson a , Gene Hung a , Raechel Peralta a , Andrew Watt a , Scott P. Henry a , Peter Adamson b , Brett P. Monia a , Michael L. McCaleb a a b

Department of Antisense Drug Discovery, Isis Pharmaceuticals, Carlsbad, California, USA GSK Ophthalmology, GlaxoSmithKline, Stevenage, Hertfordshire, United Kingdom

a r t i c l e

i n f o

Article history: Received 23 June 2015 Received in revised form 3 August 2015 Accepted 6 August 2015 Available online xxx Keywords: Complement Antisense oligonucleotides Complement factor B Lupus nephritis Therapeutics

a b s t r a c t Systemic lupus erythematosus is an autoimmune disease that manifests in widespread complement activation and deposition of complement fragments in the kidney. The complement pathway is believed to play a significant role in the pathogenesis and in the development of lupus nephritis. Complement factor B is an important activator of the alternative complement pathway and increasing evidence supports reducing factor B as a potential novel therapy to lupus nephritis. Here we investigated whether pharmacological reduction of factor B expression using antisense oligonucleotides could be an effective approach for the treatment of lupus nephritis. We identified potent and well tolerated factor B antisense oligonucleotides that resulted in significant reductions in hepatic and plasma factor B levels when administered to normal mice. To test the effects of factor B antisense oligonucleotides on lupus nephritis, we used two different mouse models, NZB/W F1 and MRL/lpr mice, that exhibit lupus nephritis like renal pathology. Antisense oligonucleotides mediated reductions in circulating factor B levels were associated with significant improvements in renal pathology, reduced glomerular C3 deposition and proteinuria, and improved survival. These data support the strategy of using factor B antisense oligonucleotides for treatment of lupus nephritis in humans. © 2015 The Authors. Published by Elsevier GmbH. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

1. Introduction Systemic lupus erythematosus (SLE) is an incurable autoimmune disease that affects more than one million individuals each year (Carroll, 2004). SLE is a multisystem autoimmune disease in which the autoantibody response targets a variety of autoantigens of diverse subcellular location. The pathogenesis of SLE is due to immune complex deposition, complement activation and the recruitment of neutrophils (Walport, 2002). Lupus nephritis (LN), the renal manifestations of SLE, may be the first symptomatic

Abbreviations: ApoB, apolipoprotein; ASO, antisense oligonucleotide; C3, complement component 3; FB, complement factor B; SLE, systemic lupus erythematosus; C3G, glomerulopathy; GN, glomerulonephritis; LN, lupus nephritis; mAb, monoclonal antibody; MPK, milligram per kilogram. ∗ Corresponding author at: Antisense Drug Discovery, Isis Pharmaceuticals, 2855 Gazelle Court, Carlsbad, California 92010, USA. Fax: +1 760.603.2600. E-mail address: [email protected] (T.R. Grossman).

finding. The presence of autoantibodies that can form immune complexes results in the deposition of these complexes in the kidneys, contributing greatly to the pathogenesis of LN (Lachmann, 1961; Sterner et al., 2014). Genetic deficiency of C1q and C4, the early components of the classical complement pathway, predispose individuals to SLE. This is believed to be due to the role that C1q has in the correct disposal of apoptotic cells and the proper catabolism of immune complexes. The complement system is under delicate regulation and even small disruptions in the delicate balance of activation and regulation can lead to an overreaction of complement, that triggers inflammation and cell lysis. Modulation of the complement system has been recognized as a promising strategy in drug discovery, and a number of therapeutic modalities have been developed (Ricklin and Lambris, 2007). On one hand, the complement system appears to have protective features as evidenced by the observation that hereditary homozygous deficiencies of classic pathway components are associated with an increased risk for SLE. On the other hand, immune complex-mediated activation of complement in affected tissues is clearly evident in both experimental

http://dx.doi.org/10.1016/j.imbio.2015.08.001 0171-2985/© 2015 The Authors. Published by Elsevier GmbH. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/ 4.0/).

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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Fig. 1. FB-ASOs effectively reduce hepatic FB mRNA and plasma FB of normal mice (A) dose dependent reduction in hepatic FB mRNA after subcutaneous administration of FB-ASOs. Six to eight weeks old C57BL6 mice were treated for 6 weeks with the indicated weekly doses of FB-ASO via subcutaneous injection. Hepatic FB mRNA levels were quantified by qRT-PCR (TaqMan). (B) Dose dependent reduction in plasma FB protein levels after subcutaneous administration of FB-ASOs. FB protein level was measured by western blot with anti-FB antibody. 1 ␮L of plasma from mice treated with saline, FB-ASO at the indicated doses or control ASO was used for the analysis. Quantification of the western blot was done using Image J. FB band intensity was normalized to the level of plasma ApoE. Results represent mean ± SEM. *** P < 0.001; by one way ANOVA with Tukey HSD multiple comparisons

and human SLE along with pathologic features that are direct consequences of complement activation (Bao and Quigg, 2007). Complement factor B protein (FB) is one of the proteins required for activation of the alternative pathway. During activation of the alternative pathway, FB binds to C3b on a pathogen surface and is cleaved to Ba and Bb by Factor D. Then, properdin binds to the C3bBb complex and stabilizes it. The C3bBb complex is a C3 convertase and leads to the formation of more molecules of C3b, resulting in activation of additional FB and setting up an amplification loop for activation of C3 (Muller-Eberhard and Schreiber, 1980; Schreiber et al., 1978). Formation of the C5 convertase C3bBbC3b follows with activation of terminal complement components on the pathogen surface. In SLE, activation of the alternative pathway can lead to renal tissue damage in disease via the amplification loop in which C3b, activated by immune complex deposition, initiates the alternative pathway, feeding back on and accentuating C3 acti-

vation. This activation promotes pro-inflammatory mechanisms by the generation of the chemotactic factor C5a (Sterner et al., 2014). FB is predominantly produced by hepatocytes and secreted into blood, (Koskimies et al., 1991; Morgan and Gasque, 1997; Marsh et al., 2001) although several other cell types can also produce FB (Ripoche et al., 1988; Strunk et al., 1988; Whaley, 1980). The hepatocyte FB is an acute phase reactant; therefore, serum levels of FB increase during inflammation stimulated by cytokines, growth factors, and bacterial products. High serum levels of complement factor B split products correlate with increased disease activity in SLE (Cameron et al., 1973; Perrin et al., 1975). In this study, we have investigated whether pharmacological reduction of FB protein levels using antisense technology could be an effective approach for the treatment of LN. This antisense approach utilized an RNase H mechanism to degrade the FB RNA species. The antisense oligonucleotide (ASO) hybridizes to its complementary RNA target and triggers target cleavage by RNase H1

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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leading to the inhibition of target RNA translation and subsequent reduction in target protein levels (Bennett and Swayze, 2010). We hypothesized ASO targeting FB mRNA will reduce FB mRNA levels in the liver and, as a result, will reduce the circulating FB protein levels to a sufficient degree that will prevent alternative complement pathway activation. Further, this reduction in alternative pathway activity will potentially ameliorate renal disease in models of LN by lowering the systemic over activation of the alternative complement system. Our results show that FB ASO administration results in a significant reduction in liver mRNA and plasma FB levels, leading to an increase in systemic C3 and improvement in renal pathology and survival in mouse models of LN. These results suggest that FB ASO could potentially serve as a novel therapeutic strategy for LN patients. 2. Results 2.1. FB ASO administration effectively reduces FB mRNA and FB protein levels in cells and in wild type mice To identify the most efficacious ASOs targeting FB for in vivo studies, we designed and screened in vitro over 150 ASOs, specifically targeting the mouse FB mRNA transcript, for efficacy in mouse primary hepatocytes. The two lead ASOs selected for in vivo evaluation, FB-ASO #1 FB-ASO #2, exhibited significant dose dependent reduction of FB mRNA levels in primary hepatocytes (IC50 values of 0.04 and 0.5 ␮M, respectively). A control mismatch ASO showed no change in FB mRNA levels. Administration of FB-ASOs #1 or #2 at 25, 50, 75 and 100 mg/kg/week to wild type mice for six weeks resulted in a significant and dose dependent reduction in FB mRNA levels in the liver. The maximal reduction achieved was 87 ± 7% with ASO #1 and 79 ± 10% with ASO #2. No change in FB mRNA level was observed in livers from mice receiving control ASO (Fig. 1A). Since the liver is the major contributor to circulating FB protein levels (Koskimies et al. 1991; Morgan and Gasque 1997; Marsh et al. 2001), we measured the level of plasma FB protein and, as expected, dose dependent reductions in hepatic mRNA corresponded well with the reduction in plasma factor B levels as quantified by western blot (Fig. 1B). 2.2. FB-ASO administration resulted in normalization of plasma C3 levels in NZB/W F1 and MRL/lpr mice MRL/MpJ-Faslpr (MRL/lpr) and New Zealand Black/White F1 (NZB/W) mouse models were used to investigate the role of FB in LN. Both mouse strains spontaneously develop LN with immune complex and complement deposition in glomeruli similar to the human disease (Drake et al., 1995; Theofilopoulos and Dixon, 1985; Watson et al., 1992). As MRL/lpr mice age and disease progresses, alternative pathway activation occurs, resulting in a drop in plasma C3 levels due to the consumption of C3 by the alternative pathway. As shown in Fig. 2A, fourteen week old MRL/lpr mice (baseline group) have similar plasma C3 levels to WT mice (30 mg/dL). When MRL/lpr mice were aged for an additional seven weeks, plasma C3 level dropped to 15 mg/dL (saline group). To test the effects of FBASO on alternative pathway activity, we measured the total plasma C3 level in LN mouse models following administration of FB-ASO #2. Our results show that weekly subcutaneous dosing of FB-ASO #2 to MRL/lpr mice for 7 weeks was sufficient to prevent the reduction in plasma C3 levels in MRL/lpr mice. C3 plasma levels in saline or control ASO treated mice was reduced to approximately 50% of baseline level, however, mice receiving FB-ASO maintained normal C3 levels of plasma C3 compared to baseline values (Fig. 2A). In addition, we tested the effect of FB-ASO on plasma C3 levels in the NZB/W F1 model (Drake et al., 1995). Administration of FB-ASO

Fig. 2. Administration of FB-ASO normalizes plasma C3 level in MRL/lpr, NZB/W and wild type mice. (A) Fourteen weeks old MRL/lpr female mice (n = 10 per group) were dosed SC for 7 weeks with FB-ASO #2 at 50 mg/kg/wk or control ASO at 50 mg/kg/wk or saline. The baseline group included MRL/lpr mice that were sacrificed at fourteen weeks old age and the mice from the different groups were sacrificed at the end of the study at the age of twenty one weeks old. (B) Sixteen weeks old NZB/W mice (n = 10 per group) were dosed SC for 7 weeks with FB-ASO #2 or control ASO at 100 mg/kg/wk, or saline. (C) Eight weeks old wild type C57/BL6 mice (n = 4 per group) were dosed SC for 7 weeks with FB-ASO #2 or control ASO at 100 mg/kg/wk, or saline. Plasma C3 level was measured using a clinical analyzer and results represent mean ± SEM, *** P < 0.05; by one way ANOVA with Tukey HSD multiple comparisons. A significant increase in plasma C3 level achieved with FB-ASO administration when compared to saline control in all studies.

#2 to sixteen week old female NZB/W mice for 6 weeks resulted in an increase in plasma C3 level (Fig. 2B). To test if the elevation in plasma C3 is unique to mouse models of LN or a general effect on the alternative pathway, wild type mice were administered with the same ASO targeting FB (FB-ASO #2) at 100 mg/kg/week or saline for 6 weeks and measured the effects on plasma C3 levels (Fig. 2C). Our results show that the effect of increased plasma C3 with reduction in FB level is not specific to LN models and is obtained in WT mice administered with FB-ASO. This suggests that the ASO medi-

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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ated reduction in FB leads to a significant reduction in alternative pathway activation, demonstrated by prevention of C3 consumption that could potentially slow progression of the disease and lead to improvement in renal pathology.

2.3. FB-ASO administration prevents renal pathology in MRL/lpr and NZB/W mice To test the effects of FB-ASO on LN phenotypes, FB-ASO #1 and FB-ASO #2 were administered to MRL/lpr and NZB/W F1 mice by once a week subcutaneous injection and evaluated the effects on disease progression and renal pathology. At the initiation of the studies in these two LN models, the mice did not present with renal disease and exhibited normal protein to creatinine ratio. The aim of the studies was to test if administration of FB-ASO could prevent disease progression and renal pathology. MRL/lpr mice spontaneously develop a severe systemic autoimmune disease similar to human SLE. Glomerular immune deposits in these mice contain IgG, IgM, IgA, Bf, C3 and C5b-9 (Biesecker et al., 1981; Madaio and Harrington, 2001; Theofilopoulos and Dixon, 1985; Watson et al., 1992). To evaluate the effects of FB-ASO on glomerular immune deposits, we stained, with C3 antibody, kidneys from MRL/lpr mice that were administered with control ASO, Saline or FB-ASO #2. A semi-quantitative analysis of the images measuring the intensity of the C3 stain in the glomeruli was conducted by measuring the C3 staining intensity of ten glomeruli per kidney from each group. C3 staining of kidney sections from MRL/lpr mice that received FB-ASO #2 for seven weeks, showed a significant improvement in renal C3 accumulation in glomeruli (Fig. 3A) and a significant improvement in renal pathology compared to the study controls (Fig. 3B). In addition, we tested the effects of FB-ASO in NZB/W F1 mice, which develop a spontaneous autoimmune disease process with striking similarities to human SLE. In female NZB/W F1 mice, the production of IgG antinuclear antibodies, including antibodies to double-stranded DNA (dsDNA), is associated with the development of a severe immune complex-mediated glomerulonephritis that results in death from renal failure in virtually all animals by 12 months of age (Clynes et al., 1998; Drake et al., 1995; Theofilopoulos and Dixon, 1985). Seventeen week old female NZB/W mice were treated with FB-ASO #1 or #2, or control ASO for 20 weeks. Subcutaneous dosing of FB-ASO #1 and #2 resulted in a robust reduction in liver FB mRNA (77% and 85% knockdown, respectively). NZB/W mice develop severe renal disease and exhibit proteinuria at four months of age, which leads to death by the age of six months (Drake et al., 1995). We evaluated the urinary protein/creatinine ratio at baseline and biweekly starting at week 8 after study initiation and scored the incidence of significant proteinuria per group at the different time points. Significant proteinuria was defined by a MTP/creatinine ratio equal or greater than 10. None of the NZB/W mice exhibited proteinuria at baseline. The first incidence of significant proteinuria was observed 8 weeks after the study was initiated at age 25 weeks. Our results show that administration of either FB-ASO #1 or #2 significantly reduced proteinuria in NZB/W mice (Fig. 4A) and improved survival (Fig. 4B). Mice that were dosed with FB-ASOs showed 94–100% survival whereas mice administered with the control ASO or saline exhibited 60–75% survival at the end of the study (Fig. 4B). To assess the effect of FB reduction on C3 deposition in the glomeruli, kidneys from surviving animals of the different treatment groups were stained with antiC3 antibody and the intensity of the C3 stain was measured using a semi-quantitative analysis. Kidneys from NZB/W mice treated with FB-ASOs had significantly lower C3 levels in their glomeruli compared to the saline or control ASO treatment groups (Fig. 4C and 4D).

3. Discussion SLE is characterized by the presence of immune complexes with autoantibodies that activate the complement pathway, forming depositions in the kidneys and contribute greatly to the pathogenesis of LN, a serious potential complication of SLE (Sterner et al., 2014). The complement pathway is believed to play a significant role in LN pathogenesis (Walport, 2002). Several studies in LN mouse models support complement inhibition as a potential therapeutic approach for LN. Successful animal studies, such as the long-term treatment with anti-C5 mAb, led to the development of strategies to manipulate the complement system in different human diseases (Bao and Quigg, 2007; Wang et al., 1996). Since a anti-C5 mAb interacts with the complement system distal to classical pathway components, it should not interfere with beneficial immune complex clearance activities of the classical pathway. Therefore, it is conceivable that in lupus nephritis, an anti-C5 mAb, such as eculizumab, could prevent direct complement-mediated injury to intrinsic glomerular cells and attenuate kidney inflammation by reducing renal leukocyte recruitment (Rovin and Parikh, 2014). Another explanation is that the efficiency of anti-C5 therapy in SLE mouse models is probably due to its effect on an internal feedback mechanism, whereby activated neutrophils liberate elastases that cleave C5. The C5a fragment formed then recruits and activates further neutrophils to make more elastase (Sahu and Lambris, 2000). Nevertheless, an essential component needed to get this complement-mediated inflammation, is the reaction of iC3b with the complement receptor CR3 on neutrophils. Therefore, downregulation of the amplification loop constitutes an important therapeutic approach against complement mediated inflammation (Lachmann, 2009). Factor B is one of the proteins required for activation of the alternative pathway and the amplification loop and plays an important role in C3 activation and consumption in models of immune complex-associated renal disease. In addition, SLE patients exhibit an elevated plasma level of C3d, Ba, properdin and FB. The level of these fragments was directly correlated with the clinical manifestations of SLE (Perrin et al., 1975). Factor B-deficient MRL/lpr mice were protected from GN (Watanabe et al., 2000). In addition to demonstrating a significant role for the complement system in lupus GN, these studies illustrated that the alternative pathway amplification loop is relevant in this immune complex-related disease. Paradoxically, LN mice with factor B deficiency were protected from renal disease, while those with C3 deficiency had worsened renal disease. One conceivable explanation for these data relates to the need for C3 (and C4) to clear glomerular immune complexes (Quigg et al., 1998). Consequently, C3-deficient MRL/lpr animals had considerably more immune deposits in glomeruli, which could interact with Fc receptors on inflammatory cells, promoting renal disease (Clynes et al., 1998; Sekine et al., 2001). We have demonstrated that administration of optimized FBASO leads to a significant reduction in plasma FB that attenuates disease in two different LN mouse models. The mechanism for the improvement in disease pathology may involve effects on the inflammatory cascade through decreased C3 activation. We demonstrated in both models of LN the normalization of plasma C3 levels following FB-ASO dosing, which are significantly reduced in these models due to over activation of the alternative pathway. The effects of factor B reduction on normalization of plasma C3 levels appear to be through decreased C3 activation and consumption. Hence, the pro-inflammatory functions of C3 may be diminished due to the lack of C3 activation via the amplification loop. Deficiencies within the complement system lead to inappropriate inflammation and impaired host defense, which can increase the risk of infection. There has only been one recorded case of factor B deficiency, and the individual presented with meningococcemia

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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Fig. 3. Administration of FB-ASO #2 improves renal pathology in MRL/lpr mice. Fourteen weeks old MRL/lpr female mice (n = 10 per group) were dosed SC for seven weeks with FB-ASO #2 at 100 mg/kg/wk, control ASO at 100 mpk or saline. (A) C3 IHC and semi quantification. C3 staining intensity was measured for 10 glomeruli per kidney for each mouse from the different groups. Data are represented as mean intensity per kidney ± SEM, * P < 0.05; one way ANOVA with Tukey HSD multiple comparisons (B) Renal pathology score. All kidneys from the different groups were stained with H&E and 10 glomeruli per kidney from each group were scored for the renal pathology using the following index. +++: Present with multi-glomerular crescents tubular casts; ++: absent crescents tubular casts with minimal Bowman capsule fibrotic change with moderate to severe segmental mesangial cell expansion and GBM thickening; +/++: absent crescents tubular casts with moderate segmental mesangial cell expansion and GBM thickening; +: absent crescents tubular casts with mild to moderate segmental mesangial cell expansion and GBM thickening. Results represent mean ± SEM. * P < 0.05; by one way ANOVA using Bartlett’s test.

but no history of any autoimmune disorder (Botto et al., 2009; Slade et al., 2013). The targeted terminal complement inhibitor eculizumab, which was approved for treatment of patients with PNH and HUS, is a humanized monoclonal antibody that specifically binds to the complement protein C5 with high affinity. Although eculizumab is generally well tolerated, the risk of Neisseria meningitidis infection is increased with treatment and all patients must be vaccinated prior to treatment (Keating et al., 2012). Antisense technology is a highly effective approach for reducing target expression in liver (Crooke, 2008.). Here, we show that subcutaneous administration of FB-ASOs resulted in a robust reduction in liver FB mRNA, with corresponding reductions in plasma FB levels. Our results confirm the important role of complement FB in the development of GN in LN mouse models. Using FB-ASOs, we demonstrated normalization of plasma C3 levels and improved LN in mice, reduced C3 deposits in the glomeruli, improved kidney histopathology, reduced proteinuria and improved survival. ASO

utilizing identical chemical modifications as used in this study, are being routinely used in the clinical setting today, and have demonstrated long term therapeutic utility, (Crooke, 2008; Li et al., 2014) indicating a potential therapeutic opportunity of FB-ASO for a long term treatment strategy. We suggest that ASOs targeting FB have the potential to become a novel therapeutic approach for LN and other renal diseases, such aHUS and C3G, in which activation of the alternative complement pathway plays a significant role in the pathogenesis. 4. Materials and methods 4.1. ASO synthesis and chemistry Antisense oligonucleotides (ASOs) used were 20 nucleotides in length and chemically modified with phosphorothioate in the backbone, five residues at each terminus, and a cen-

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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Fig. 4. Administration of FB-ASOs improves survival, proteinuria and renal pathology in NZB/W F1. Seventeen weeks old NZB/W F1 female mice (n = 10–16 per group) were dosed SC with 100 mg/kg/wk of FB-ASOs #1 and #2 or control ASO or saline for twenty weeks. (A) Proteinuria presented as cumulative incidence of significant proteinuria measured by MTP/creatinine ratio. Significant proteinuria was defined at MTP/creatinine ratio equal or greater than 10. Tukey HSD multiple comparisons analysis (B) survival curves. Results represented as percent survival. Statistical analysis Log-rank (Mantel–Cox) test (C) C3 IHC (D) C3 IHC semi-quantification of kidneys from surviving animals. Quantification of staining pixel density as well as staining area per glomerulus was conducted using Aperio image scope program. C3 staining intensity of 10 glomeruli from each kidney was measured (n = 6–8) resulting in analysis of 60–80 glomeruli per group. Data are represented as mean intensity per kidney ± SEM, * P < 0.05; one way ANOVA with Tukey HSD multiple comparisons.

tral deoxynucleotide region of ten residues (5-10-5 gapmer). 2 -O-Methoxyethyl modified antisense phosphorothioate oligonucleotides (2 -MOE ASOs) were synthesized at Isis Pharmaceuticals, Inc. (Carlsbad, CA) as described previously (Baker et al., 1997). Oligonucleotides were synthesized using an Applied Biosystems 380B automated DNA synthesizer (PerkinElmer Life and Analytical Sciences–Applied Biosystems) and purified as previously described (Bennett and Swayze, 2010). Sequences were as follows: ASO #1, 5 -GTCCTTTAGCCAGGGCAGCA-3 ; ASO #2, 5 -TCCACCCATGTTGTGCAAGC-3 . ASO #3 5 TTCCGAGTCAGGCTCTTCCC-3 ASOs were dissolved in PBS (Ca–Mg-; Invitrogen) for in vivo experiments

4.3. Quantitative real-time PCR Cultured cells were lysed, and total RNA was extracted with a QIAGEN RNeasy column. Animal tissues were homogenized in a guanidine isothiocyanate solution (Invitrogen) supplemented with 8% 2-mercaptoethanol (Sigma–Aldrich). Total RNA was prepared according to the RNeasy mini kit instructions (QIAGEN). The qRT-PCR analyses were done using an ABI Prism 7700 sequence detector (Applied Biosystems). PCR results were normalized to total RNA measure by Quant-iT RiboGreen RNA Reagent (Molecular Probes). The sequences of primers and probe used were as follows: FB: forward: 5 - GGGCAAACAGCAATTTGTGA-3 , reverse: 5 - TGGCTACCCACCTTCCTTGT-3 , probe: 5 -Fam- CTGGATACTGTCCCAATCCCGGTATTCC -Tamra-3 ; PCR results were normalized to total RNA measure by Quant-iT RiboGreen RNA Reagent (Molecular Probes).

4.2. Culture of hepatocytes and treatment with ASO 4.4. Animal studies Mouse primary hepatocytes were prepared using the standard collagenase procedure described previously (Quistorff et al., 1990). Electroporation of ASOs was carried out using the HT-200 BTX Electroporator with the ElectroSquare Porator (ECM 830) voltage source in 96-well electroporation plates (BTX, 2 mm; Harvard Apparatus). Cells were harvested 16 h after electroporation. Cells were electroporated in the presence of FB-ASOs at the indicated concentrations and plated. Sixteen hours after transfection, total cellular RNA was isolated, and the amount of FB mRNA was quantified using a quantitative RT-PCR (qRT-PCR) assay (TaqMan).

Studies were conducted in WT, NZB/W and MRL/MpJ-Faslpr mice (Jackson Laboratories, Bar harbor, ME). Mice were housed four animals per cage at 22–25◦ with 12 h light:dark cycle and free access to food and water. ASO drugs were prepared in PBS and were administered by subcutaneous injection. Dosages are reported as weekly dose for all the animal studies and mice were dosed subcutaneously once per week. Plasma was collected by cardiac puncture and frozen at −70 ◦ C or less. Urine was collected over night on ice for total protein and creatinine analysis. Urine was stored at −70 ◦ C

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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or less until analyzed. Liver and kidneys were collected at sacrifice approximately 72 h after dosing was completed. Plasma C3, urine total protein and creatinine levels was measured using the AU480Clinical Analyzer (Beckman Coulter).

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Appendix A. Supplementary data Supplementary data associated with this article can be found, in the online version, at http://dx.doi.org/10.1016/j.imbio.2015.08. 001.

4.5. Study approval

References

All the animal studies were conducted under protocols approved by the Institutional Animal Care and Use Committee (IACUC) of Isis Pharmaceuticals

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4.6. Plasma FB western blot Blood was collected under anesthesia via cardiac puncture into sample tubes coated with the anticoagulant EDTA. Blood was centrifuged at 4000 × g for 15 min and platelet-poor plasma was collected and stored at −80 ◦ C prior to western blotting. One microliter of plasma samples from all groups were analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis followed by immunoblotting with antibodies to FB. Rabbit anti mouse FB (Sigma) at a dilution of 1:1000. Secondary—Goat Anti-Rabbit IgG HRP conjugate at a dilution of 1:8000. Rabbit anti-mouse ApoE antibody (Abcam) at a dilution of 1:5000. Image quantification of the western blot was done by Image J program (NIH).

4.7. Plasma C3 level Plasma C3 level was measured using the AU480Clinical Analyzer (Beckman Coulter).

4.8. Histological analysis Kidney samples were fixed in 10% buffered formalin and embedded in paraffin wax. Multiple adjacent 4 mm sections were cut and mounted on glass slides. After dehydration, the sections were stained with H&E or PAS. IHC for C3, the kidneys were embedded in OCT and frozen sections were mounted on glass slides and stained with Rabbit anti mouse anti-C3 antibodies (Sigma) and Donkey anti mouse IgG (Jackson Immunoresearch Labs). To assess the C3 staining intensity in kidneys from the different treatment group we used a semi quantitative analysis which was done by measuring the pixel intensity of the C3 and IgG stain of 10 glomeruli per kidney.

4.9. Statistics Values presented represent as mean ± SEM. Statistical difference between groups was determined using one way ANOVA with Tukey HSD multiple comparisons P < 0.05 was considered to be significant.

Conflict of interest Peter Adamson an employee of GSK and all other authors are employees and shareholders of Isis Pharmaceuticals, Inc.

Acknowledgments The authors would like to thank Patrice Lincoln and Alexey Revenko for their assistance with the in vivo experiments and data analysis and Tracy Reigle for her help with formatting the figures.

Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001

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Please cite this article in press as: Grossman, T.R., et al., Inhibition of the alternative complement pathway by antisense oligonucleotides targeting complement factor B improves lupus nephritis in mice. Immunobiology (2015), http://dx.doi.org/10.1016/j.imbio.2015.08.001