JOURNAL OF BACTERIOLOGY, July 2004, p. 4246–4253 0021-9193/04/$08.00⫹0 DOI: 10.1128/JB.186.13.4246–4253.2004 Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Vol. 186, No. 13
Involvement of Streptococcus gordonii Beta-Glucoside Metabolism Systems in Adhesion, Biofilm Formation, and In Vivo Gene Expression Ali O. Kilic¸,1 Lin Tao,1* Yongshu Zhang,2 Yu Lei,2 Ali Khammanivong,2 and Mark C. Herzberg2,3 Department of Oral Biology, College of Dentistry, University of Illinois at Chicago, Chicago, Illinois 60612,1 and Department of Oral Sciences, School of Dentistry,2 and Mucosal and Vaccine Research Center,3 University of Minnesota, Minneapolis, Minnesota 55455 Received 4 November 2003/Accepted 15 March 2004
Streptococcus gordonii genes involved in beta-glucoside metabolism are induced in vivo on infected heart valves during experimental endocarditis and in vitro during biofilm formation on saliva-coated hydroxyapatite (sHA). To determine the roles of beta-glucoside metabolism systems in biofilm formation, the loci of these induced genes were analyzed. To confirm the function of genes in each locus, strains were constructed with gene inactivation, deletion, and/or reporter gene fusions. Four novel systems responsible for beta-glucoside metabolism were identified, including three phosphoenolpyruvate-dependent phosphotransferase systems (PTS) and a binding protein-dependent sugar uptake system for metabolizing multiple sugars, including beta-glucosides. Utilization of arbutin and esculin, aryl-beta-glucosides, was defective in some mutants. Esculin and oligochitosaccharides induced genes in one of the three beta-glucoside metabolism PTS and in four other genetic loci. Mutation of genes in any of the four systems affected in vitro adhesion to sHA, biofilm formation on plastic surfaces, and/or growth rate in liquid medium. Therefore, genes associated with beta-glucoside metabolism may regulate S. gordonii in vitro adhesion, biofilm formation, growth, and in vivo colonization. Streptococcus gordonii is a pioneer colonizer on the surface of human teeth, initiating the formation of dental plaque (25). Although not directly associated with dental or gingival diseases in the oral cavity, S. gordonii colonizes damaged heart valves once it enters the bloodstream in the experimental rabbit (15) and is considered to cause endocarditis in humans (1, 8, 12). Thus, the virulence of S. gordonii is reflected in its ability to adhere, colonize, and survive in the heart, where it is a pathogen, and on teeth in the oral cavity, where it is not. Its virulence in a specific environment may reflect expression of genes uniquely in that environment. Using an in vivo expression technology (IVET) library constructed in S. gordonii V288, at least 13 genes were shown to be expressed in vivo on infected heart valves during experimental endocarditis, but they were unexpressed in vitro under laboratory conditions (15). Since expression occurred only on heart valves, these genes were suggested to contribute to virulence and perhaps pathogenicity. Similarly, S. gordonii genes expressed during in vitro colonization of saliva-coated hydroxyapatite (sHA) were identified using the IVET library (17). Among the genes expressed during colonization of sHA and damaged heart valves in the rabbit were beta-glucoside metabolism-encoding genes. We therefore initiated in vitro studies to understand how the beta-glucoside metabolism genes might contribute to colonization of heart valves in infective endocarditis and on sHA. Bacteria ferment beta-glucoside sugar substrates, including cellobiose, arbutin, salicin, and esculin. While common in
plants and useful in establishing phenotypic fermentation patterns of bacteria, the aryl-beta-disaccharides are not found in mammalian tissues and fluids. Mammalian extracellular matrix, however, is rich in glycosaminoglycans (GAGs), which contain beta-linked disaccharide repeating units (22, 33). Structural analogues of cellobiose or N,N⬘-diacetylchitobiose [(GlcNAc)2], beta-linked disaccharides are released when GAGs degrade. In the rabbit model of endocarditis, S. gordonii may have metabolized GAGs from the injured heart valves. Metabolism of beta-glucosides by other species involves known genes. In Escherichia coli, the cel (cellobiose) operon is induced by (GlcNAc)2 and has been renamed the chb (N,N⬘-diacetylchitobiose) operon (14). Listeria monocytogenes expresses beta-glucoside permease in vivo (10). Hence, metabolism of beta-glucosides, perhaps in the form of GAG-derived oligosaccharides, may be an important adaptive response to survival in vivo. In the present study, we compared the gene sequences of the IVET clones with the S. gordonii genomic data (www.tigr.org) to identify the proximal genes in each locus. Five beta-glucoside-associated genes expressed in vivo during experimental endocarditis were shown to localize with other beta-glucoside metabolism genes comprising two different novel phosphoenolpyruvate-dependent phosphotransferase systems (PTS) and a binding protein-dependent sugar transport and metabolism. We also used this IVET system to identify S. gordonii genes critical to and perhaps induced during biofilm formation under in vitro conditions. Among the newly identified genes, many are associated with the metabolism of beta-glucosides through yet another PTS. Therefore, four novel systems for beta-glucoside metabolism have been identified in S. gordonii which may contribute to virulence during colonization in mammalian environments.
* Corresponding author. Mailing address: Department of Oral Biology, College of Dentistry, University of Illinois at Chicago, 801 South Paulina St., Chicago, IL 60612. Phone: (312) 355-4077. Fax: (312) 996-6044. E-mail:
[email protected]. 4246
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VOL. 186, 2004 TABLE 1. S. gordonii strains used in the study Strain
Relevant characteristics
Isolation method
Source or reference
V288 KG212 KG206 KG207 KG210 KG202 KG205 KG208 KG211 MG1006 MG1007 MG1021 MG1015 MG2025 MG2026 CG420 CG425 CG421 CG426 CG422 CG423 CG427 CG480 CG482 CG484 CG486 CG495 CG532
Wild type bglC-amy-cat Tcr escB1-amy-cat Tcr escR-amy-cat Tcr escA-amy-cat Tcr gomA-amy-cat Tcr iviE-amy-cat iviH-amy-cat msrA-amy-cat bfbF1-amy-cat Tcr bfbB-amy-cat Tcr escB2-amy-cat Tcr bfrA-amy-cat Tcr bfbF2-amy-cat Tcr bfbR-amy-cat Tcr escA Emr escA Kmr escP Emr escP Kmr gomG Emr bglJ Emr gomF Emr fucA Emr manB Emr gomH Emr gomR Emr ⌬gom Emr merA-amy-cat Tcr
IVET IVET IVET IVET IVET IVET IVET IVET Biofilm Biofilm Biofilm Biofilm Biofilm on sHA Biofilm on sHA Insertion Insertion Insertion Insertion Insertion Insertion Insertion Insertion Insertion Insertion Insertion Deletion Esculin-negative
Gary Dunny 15 15 15 15 15 15 15 15 This study This study This study This study This study This study This study This study This study This study This study This study This study This study This study This study This study This study This study
MATERIALS AND METHODS Bacterial strains, media, and chemicals. Bacterial strains used in this study are listed in Table 1. S. gordonii V288 and its reporter gene-fusion strain library based on the streptococcal IVET vector pAK36 (15) were grown in Todd-Hewitt broth (THB; Difco) or FMC medium (40) at 37°C under CO2-rich conditions. Tetracycline (TET) was added at 15 g/ml to maintain the selective pressure for growth of the strain library. For sugar fermentation studies, purple broth (Difco) supplemented with appropriate carbohydrate was used. To detect esculin hydrolysis, a ferrous medium was used (4). For the amylase reporter assay, modified Jordan medium (13) supplemented with 0.5% starch (wt/vol) and 1.5% agar (wt/vol) plus 0.1% glucose (wt/vol) with or without 0.1% esculin (wt/vol) was used. Genes induced during biofilm formation on sHA. The adhesion assay described by Gong et al. (11) was modified to study biofilm formation by using the IVET library for S. gordonii. An overnight culture of the S. gordonii V288 reporter gene (amy-cat) fusion library in THB with TET was diluted 1,000-fold in FMC medium. Chloramphenicol was added to a concentration of 15 g/ml to provide selective pressure for biofilm-induced genes. Bacteria were mixed with sHA and incubated at 37°C for 24 h. Adherent surviving S. gordonii cells were removed and spread on THB plates containing TET. Single colonies were replica plated onto three new THB plates. One contained 5 g of chloramphenicol/ml; the second contained 0.5% starch (wt/vol); and the third was THB without antibiotic supplement. After incubation for 24 h at 37°C, the colonies on the starch agar plate were flooded with a solution of 0.5% I2 and 1% KI to detect amylase activity (starch hydrolysis). Colonies that were sensitive to chloramphenicol and negative for amylase activity were selected from the third plate. Selecting mutants defective in biofilm formation on plastic. Biofilms were formed in 96-well polystyrene microtiter plates (18, 27). The S. gordonii V288 reporter gene-fusion library was spread on THB plates containing TET and incubated at 37°C for 24 h. Individual colonies were picked and transferred into wells on microtiter plates (Costar 3799) containing 200 l of THB with TET. Duplicates were made by transferring 100 l of each culture to another well on a new microtiter plate. Plates were incubated at 37°C for 24 h, and then 25 l of a 1% crystal violet (CV) solution was added into each well. The plates were incubated at room temperature for 15 min and rinsed thoroughly with water. Biofilm formation was quantified by the addition of 200 l of 95% ethanol to each CV-stained well, of which 125 l was transferred to a new microtiter plate.
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The absorbency at 568 nm was determined with a plate reader. Bacteria with weak CV staining were picked from the duplicate plates as putative biofilm formation-defective mutants. Selecting mutants defective in beta-glucoside fermentation. Single colonies of the S. gordonii V288 reporter gene-fusion library were plated onto modified Jordan agar supplemented with esculin and ferrous salt (4). The clones that did not show black pigmentation were tested again for their abilities to ferment cellobiose, arbutin, and salicin. PCR procedures. Arbitrary PCR was used to determine the DNA sequence flanking the inserted IVET vector (2, 28). In the first-round PCR, a primer unique to the ori sequence of pACYC184 (oriExt, 5⬘-AGCTCAGAGAACCTT CGAAAAAACC-3⬘) and an arbitrary primer (ARB1, 5⬘-GGCCACGCGTCGA CTAGTACNNNNNNNNNNGATAT-3⬘) were used in 50-l PCR mixtures (1⫻ Vent polymerase buffer, MgSO4 [1 mM], deoxynucleoside triphosphates [0.25 mM], and Vent [exo⫹] DNA polymerase [1 U] with 5 l of an overnight THBgrown culture as the DNA template). The first-round PCR conditions were 95°C for 5 min; 6 cycles of 94°C for 30 s, 30°C for 30 s, and 72°C for 1 min; 30 cycles of 94°C for 30 s, 43°C for 30 s, and 72°C for 1 min; and a final step at 72°C for 10 min. The second-round PCR was performed with the same conditions as the first round, except 5 l of the first-round PCR product was used as DNA template with primers ARB2 (5⬘-GGCCACGCGTCGACTAGTAC-3⬘) and oriInt (5⬘-CAAGAGATTACGCGCAGACC-3⬘). The ARB2 sequence was identical to the 5⬘ end of the ARB1 primer. The oriInt primer was derived from a sequence of pACYC184 located closer than the oriExt sequence to the junction between the inserted pAK36 and the S. gordonii chromosome. Nucleotide sequence determination and genetic loci identification. The PCR products were purified using the QIAquick PCR purification kit (QIAGEN). The purified PCR products were sequenced using the oriInt primer at the Advanced Genetic Analysis Center, University of Minnesota. The sequences were compared with the GenBank database using the BLAST program. The DNA sequence data that matched genes encoding the utilization of beta-glucoside sugars from our previous IVET study (15) and those from the present study were used for BLAST analysis against the partially completed S. gordonii genome (The Institute for Genomic Research [TIGR]; www.tigr.org). In case complete sequence data were not available for a certain locus, the inverse PCR technique (26) was used to complete the sequence data. Phylogenetic analysis. From their nucleotide sequences, genes in S. gordonii beta-glucoside regulons were translated into putative proteins. Protein sequences of other bacterial species were obtained from GenBank via a BLAST search. The sequences were aligned using the CLUSTAL X program (version 1.81; http://inn -prot.weizmann.ac.il/software/ClustalX.html) (41), and phylogenetic trees were constructed with the TreeExplorer program (http://evolgen.biol.metro-u.ac.jp /TE/TE_man.html). Bootstrap values were obtained with the CLUSTAL X program. Mutant construction and analysis. Mutants were constructed by two methods. All mutants except CG495 were constructed by insertion duplication using a streptococcal integration plasmid, pVA891 or pSF151 (38). Strain CG495 was constructed by gene replacement to delete the target gene(s). To delete the target genes, the flanking genes, fucA and bglJ, of the target S. gordonii gom locus were amplified by PCR and cloned jointly into PCR cloning vector pGEMT-Easy (Promega). Next, an erythromycin resistance cassette derived from the streptococcal shuttle plasmid pVA838 (21) was inserted into the fucA-bglJ joint gene fragment, replacing parts of both genes. The recombinant gene cassette was then excised by restriction enzyme digestion. Following gel purification, the excised recombinant gene cassette was used to transform S. gordonii V288 to erythromycin resistance. The gene insertion or deletion in each mutant was confirmed by PCR with appropriate primers. Sugar fermentation. Mid-exponential-phase cells growing in THB with appropriate antibiotics were harvested by centrifugation, washed once, and then resuspended in purple broth supplemented with a sugar and antibiotics. Sugars (all from Sigma or as noted) tested for fermentation included glucose, fructose, galactose, lactose, maltose, mannose, cellobiose, arbutin, salicin, and esculin and chitin oligosaccharides [(GlcNAc)n; n ⫽ 2 to 8], N, N, N⬙-triacetyl chitotriose, ␣1-2, 1-3, or 1-6 D-mannobiose, ␣1-3-␣1-6-D-mannopentose, Lewis-X oligosaccharide, GlcNAc-1-2 mannose (Dextra), heparin, chondroitin sulfate, and lichenan. The cultures were incubated at 37°C, and color changes were monitored hourly. To assay for esculin hydrolysis, mid-exponential-phase cultures of the wild-type strain and mutants were spotted onto ferrous salt-containing agar and incubated for 24 h. A black color forms from the hydrolysis product of esculin, 6,7-dihydroxycoumarin, which reacts with the ferrous ion. To analyze for glucosemediated catabolite repression, the ferrous medium was supplemented with glucose.
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FIG. 1. Genetic loci encoding beta-glucoside metabolism in S. gordonii. Shown are genes induced specifically in the rabbit heart during experimental endocarditis (15), genes induced during biofilm formation on sHA, and genes required for in vitro biofilm formation on plastic, indicated by diamonds, triangles, and circles, respectively. The star indicates the gene induced by shifting S. gordonii from mildly acidic (oral) to neutral (blood) pH (42). The small bending arrows represent promoter-like sequences. U, overlapping reading frames.
Biofilm and sHA adhesion assays. Mutants and previously isolated IVET clones were analyzed for their abilities to form biofilms on microtiter plates as described above. For the sHA adhesion assay, bacteria were cultured overnight (16 to 18 h) in 3 ml of FMC with [3H]thymidine (10 Ci/ml). Cells were centrifuged and resuspended to a final optical density at 620 nm of 0.32 (109 cells/ml). Suspensions (1 ml) were added to tubes with sHA and rotated for 1 h at room temperature. The sHA with bound bacteria was allowed to settle, washed three times, and transferred to scintillation vials. Radioactivity associated with sHA was counted with a scintillation counter. Triplicates of each sample were analyzed. Statistical analysis was performed by using the two-tailed, unequal variance t test with comparisons between the values for the wild type and each mutant. Sugar induction assay. To analyze whether the expression of the genes encoding beta-glucoside metabolism and/or other genes induced during endocarditis can be induced by any beta-glucoside sugars, strains with the pAK36 plasmid reporter gene fusion were tested on Jordan agar plates supplemented with 0.5% starch and 0.5% cellobiose, arbutin, salicin, esculin, or oligochitosaccharide. Mid-exponential-phase cultures in THB were diluted 10-fold with THB and spotted (5 l) onto the starch agar plate. After incubation for 16 h, the plates were flooded with the iodine solution to detect the expression of amylase. The wild-type strain V288 was used as a control.
RESULTS Identification of genes and loci associated with the utilization of beta-glucosides. By homology analysis, DNA sequences of 5 (iviL [new name, bglC], iviJ [escA], iviF [escB], iviG [escR], and iviB [gomA]) of the 13 unique S. gordonii clones induced in vivo during experimental endocarditis were found to be asso-
ciated with three separate genetic loci encoding the utilization of beta-glucosides. Additional sequences of these loci were obtained by searching the partially completed S. gordonii genome at the TIGR website. The sequence of the gom locus was not completed by TIGR. Therefore, the inverse PCR technique was used to synthesize flanking DNA and obtain additional sequences (accession number AY526569). Among 44 S. gordonii IVET clones with genes induced during biofilm formation on sHA, 11 had reporter gene insertions in two genes of a new beta-glucoside locus (bfbF and bfbR). Among 35 mutants with genes required for biofilm formation on plastic, 9 clones with six unique insertion sites were related to beta-glucoside metabolism. Four of the unique insertion sites were within the same locus as the sHA biofilm-associated genes. The fifth insertion site matched one of the three loci identified from the IVET studies on heart valves, and the sixth site was associated with an isolated beta-glucosidase gene. Therefore, biofilm formation by S. gordonii in different environments appeared to involve as many as four putative regulons for the utilization of beta-glucoside-like sugars (Fig. 1). A mutant, CG532, defective in esculin, arbutin, and salicin fermentation was isolated from the S. gordonii pAK36 plasmid insertion strain library. Its target gene was sequenced using the Amy-R primer. The genetic locus was identified from the S.
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gordonii genome and showed high homology to the mercury resistance gene (merA) of many bacteria. Nucleotide sequence analysis. (i) The bgl locus. The bgl locus includes five open reading frames (ORFs). The first two ORFs, separated by 14 nucleotides, encode two putative transcriptional regulators, BglD (249 amino acids [aa]) and BglE (322 aa). The remaining three ORFs are highly homologous to genes encoding three components, BglA (107 aa), BglB (109 aa), and BglC (433 aa), of a PTS permease (enzyme II) for transporting beta-glucosides in Streptococcus pyogenes (Q8NZ66) and Streptococcus pneumoniae (Q97SS4). bglA is 223 nucleotides downstream of bglE and has its own putative promoter. The two downstream ORFs, bglB and bglC, are separated by only 11 and 2 nucleotides, respectively, from their immediate upstream ORFs. However, a gene encoding a phospho-beta-glucosidase is not found in this locus. (ii) The esc locus. The esc locus includes six ORFs. The first ORF encodes the PTS permease (enzyme II), EscP (629 aa), for transporting beta-glucosides. The second ORF encodes a hypothetical protein, EscB (420 aa), which is homologous to the CapA protein associated with capsule synthesis of Streptococcus agalactiae (Q8E4G0). The third and fourth ORFs encode two conserved hypothetical proteins, EscC (75 aa) and EscD (55 aa). The fifth ORF, transcribed in the opposite direction, encodes a protein EscR (186 aa) homologous to the Streptococcus mutans regulator BglC (Q9KJ78). The last ORF, escA, encodes a protein (478 aa) homologous to S. mutans phospho-beta-glucosidase BglA (Q9KJ76). These ORFs, except ORF4, have their own putative promoters. A putative RNA antiterminator (RAT) sequence, GGATTGTTACTGA TCACGCAGGCAAAAC CTA, is located 125 bases upstream of the initiation codon for the escP gene. It matches the consensus sequence of RATs (5). (iii) The bfb locus. The bfb locus includes seven ORFs. The first ORF, bfbF, encodes a protein (488 aa) homologous to S. pneumoniae phospho-beta-glucosidase BglA (Q8DR89). The second ORF encodes a putative protein, BfbG (79 aa). The third ORF, bfbB, encodes the B subunit of a beta-glucoside permease (106 aa; PTS enzyme IIB). The fourth ORF, bfbR, encodes a BglG-like antiterminator (656 aa). The fifth ORF, bfbA, encodes the A subunit of a PTS enzyme II (105 aa). The sixth ORF, bfbD, encodes a hypothetical protein (161 aa), possibly the D subunit of the PTS enzyme II. The seventh ORF, bfbC, encodes the C subunit of the PTS permease enzyme II (451 aa) for transporting beta-glucosides. (iv) The gom locus. The gom locus has 15 ORFs, including fucA (␣-1,3/4 fucosidase; 576 aa), manA (␣-1,2-mannosidase; 697 aa, in opposite orientation), gomA (hypothetical protein; 435 aa), manB (␣-1,6 mannosidase; 877 aa), gomR (regulator; 292 aa), bhsA (N-acetyl-beta-hexosaminidase; 627 aa), gomF and gomG (binding protein-dependent sugar transporter membrane components; 311 aa each), gomE (sugar-binding protein; 515 aa), gomB (hypothetical protein; 204 aa), gomH (twocomponent sensor histidine kinase; 529 aa), gomD (two-component response regulator; 427 aa), bglJ (beta-glucosidase; 461 aa), gomL (VirJ-like sensor histidine kinase; 176 aa), and glmS (glucosamine-6-P synthase; 603 aa). An ATP-binding protein for the ABC sugar transport cassette is not found in this locus. (v) The bfr locus. Although the bgl locus does not have a beta-glucosidase, a gene encoding 6-phospho-beta-glucosidase
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(BglF; 479 aa) was identified in a separate locus, the bfr locus. Immediately downstream of bglF are two genes, bfrA and bfrB, encoding a biofilm-related two-component system (44). Phylogenetic analysis. S. gordonii may use four different systems to metabolize beta-glucosides during biofilm formation and/or in vivo growth. To determine their genetic similarities and relationships with related proteins of other bacterial species, phylogenetic trees were constructed (data not shown). S. gordonii BglJ is more homologous to beta-glucosidases of S. pneumoniae (BglA2; Q8DRA9) and S. pyogenes (BglA2; Q8K735) than its three other beta-glucosidases, BglF, BfbF, and EscA. Likewise, S. gordonii EscP is more similar to BglP of S. mutans than to its two other beta-glucoside permeases, BglC and BfbC, which contain three or four subunits. S. gordonii EscB is highly homologous to capsule synthases of a range of species and genera, including CapA of S. agalactiae (Q8E4G0). Phenotypes of various strains. In addition to the reporter gene-fusion strains (some also created mutations by splitting target genes), insertion or deletion mutants were constructed to assign phenotypes to the genes located in these loci. When sugar fermentation patterns were compared, the mutants were similar to the wild-type except for hydrolysis of two beta-glucosides, arbutin and salicin. Most mutants defective in one gene involved in beta-glucoside metabolism appeared to ferment these two sugars more slowly. The mutants and wild-type strains, in contrast, fermented two other beta-glucoside sugars, esculin and cellobiose, similarly. Only two mutants, MG1015 (bfr amy cat) and CG532 (merA amy cat), were defective in arbutin, salicin, and esculin fermentation, suggesting suppression of multiple beta-glucoside regulons in these mutants. Regardless of insertion sites, all 13 strains with pAK36 insertions isolated by in vivo selections and about one-third of random clones of the pAK36 library displayed glucose inhibition of esculin hydrolysis, suggesting a possible artifact introduced by the plasmid. Therefore, strains (all CG strains except CG532) constructed with pSF151 or pVA891 were used to test for esculin hydrolysis. The wild-type and the tested mutant strains, except CG423 (bglJ) and CG495 (⌬gom), fermented esculin in the presence of glucose. The wild-type strain did not ferment ␣1-2- or ␣1-3-D-mannobiose, ␣1-3-␣1-6-D-mannopentose, heparin, chondroitin sulfate, or lichenan, but it fermented Lewis-X oligosaccharide, N,N,⬘,N⬙-triacetylchitotriose (chitin oligosaccharides), ␣-1,6-Dmannobiose, and GlcNAc-1-2 mannose. All mutants fermented Lewis-X oligosaccharide and chitin oligosaccharides. Mutants defective in manB, gomH, or gomR showed reduced fermentation of GlcNAc-1-2-D-mannose and no fermentation of ␣1-6-D-mannobiose. To determine if selected genes were induced by any -glucoside sugars, ␣-amylase activities of the reporter gene-fused clones were detected in agar containing starch (Fig. 2). Based on amylase reporter activities, cellobiose, arbutin, and salicin did not induce expression of any genes tested. Esculin and oligochitosaccharides induced genes in the esc system but not any of the other three systems for -glucoside metabolism. Also, by testing other genes induced during endocarditis (15) or required for biofilm formation (44), four additional genetic loci were induced by the same two sugars. These were iviE (located upstream of dnaX), iviH (an amino acid transporter), iviK (msrA, peptide methionine sulfoxide reductase), and
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FIG. 2. Esculin induction of reporter gene-fused S. gordonii strains. The reporter amylase activity was disclosed on starch agar plates supplemented with the sugars indicated after incubation with an iodine solution. (A) Esculin only; (B) esculin plus glucose; (C) glucose only. The identities and locations of these strains are as follows: top, KG202; second row (from left to right) KG206, KG207, KG210, and KG212; third row, MG1006, MG1007, MG2025, and MG2026. Note the esculin induction and glucose inhibition of amylase activities in the three mutant strains of the esc regulon, KG206, KG207, and KG210. Interestingly, these three strains presented diminishing amylase activities, as indicated by a dark color on agar in the presence of glucose, suggesting the accumulation of IPS (35). These plates contained TET to maintain the inserted plasmid. The wild-type strain V288 was on three separate plates without TET. Its results were the same as those for KG202 (data not shown).
bfrAB. Interestingly, mutants defective in these esculin-inducible genes showed iodophilic polysaccharide (IPS), as detected on plates containing glucose and starch. IPS was not seen in the wild type or strains with plasmid insertions in other betaglucoside regulons. The escA (CG420 and CG425) and escP (CG421 and CG426) mutants constructed with plasmids pSF151 or pVA891 without the amy-cat reporter gene also showed IPS on agar containing glucose and starch (data not shown). This ruled out the possibility that IPS accumulation in these strains was an artifact introduced by the amy reporter gene. To ascertain if genes in these loci were associated with functions in vitro, adhesion to sHA, biofilm formation on plastic, and growth rates of these strains were analyzed in vitro (Table 2). Mutation of many genes in these four presumptive regulons resulted in decreased biofilm formation and/or growth rate. Remarkably, mutation in escA, escR, or gomH and deletion of the gom regulon resulted in cells with defective abilities to adhere to sHA in buffer. In some cases, these mutations were accompanied by defects in growth rate or in vitro biofilm formation (bglC and escA). Other genes associated with defective adhesion did not manifest defects in biofilm formation or growth rate (gomH and ⌬gom). While defective in adhesion, the escR mutant formed biofilm and showed a growth rate similar to that of wild type. Mutation in escB2 showed no adhesion defect, but biofilm formation was substantially reduced. DISCUSSION Several S. gordonii surface components probably mediate adhesion to the tooth surface, including sialic acid-binding adhesin (37), amylase-binding protein (30), CshA/B (23), SspA/B (6), and ScaA (16). While genes for these adhesin proteins may contribute to colonization in vivo, none are well established at this time. Recently described genes associated with S. gordonii biofilm formation encode putative proteins
involved in signal transduction, peptidoglycan biosynthesis, manganese homeostasis, and fructose PTS (18–20). Furthermore, S. gordonii cells forming biofilms in vivo on heart valves (15) or in vitro on sHA (17) induced genes associated with beta-glucoside metabolism at unexpected frequencies. To survive in vivo and colonize as a biofilm, S. gordonii must seek a carbon source for growth. Available nutrients, especially sugars, will differ from those found in laboratory growth media. Due to variations in available sugars in nature, bacteria have developed highly controlled sugar metabolism systems. If multiple sugars exist in the environment, bacteria would first consume primary sugars, such as glucose. When primary sugars are exhausted or unavailable, bacteria induce genes for metabolizing secondary sugars (29), including beta-glucosides. Expression of these genes is often subject to carbon catabolite repression by primary sugars (32). Exceptions exist. For example, S. mutans has two systems to metabolize beta-glucoside sugars (3–5). One system is inhibited by glucose, while the other is not. Induced in vivo during experimental endocarditis (15) and in vitro during biofilm formation on sHA (17), and also required for biofilm formation on plastic microtiter plates (44), four novel transport and metabolism systems for beta-glucosides have been identified. Three are PTS, and the fourth is a binding protein-dependent sugar uptake system for metabolizing multiple sugars including beta-glucosides. Because each of these systems consists of multiple transcriptional units, they appear to organize and function as regulons, rather than operons. The first putative regulon, bgl, has five genes in two transcriptional groups. The first group encodes two putative transcriptional regulators. The second group encodes three subunits of a PTS enzyme II permease. Since the bgl locus does not have a beta-glucosidase gene, this gene may be at a separate locus. The bfr locus has a gene encoding a beta-glucosidase (BglF). Whether this gene is related to the bgl regulon is
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TABLE 2. Phenotypes of various S. gordonii beta-glucoside metabolism-related mutants Strain (genotype)
V288 (wild type) KG212 (bglC-amy-cat) KG206 (escB1-amy-cat) MG1021 (escB2-amy-cat) KG207 (escR-amy-cat) KG210 (escA-amy-cat) MG1006 (bfbF1) MG1007 (bfbB) MG2025 (bfbF2-amy-cat) MG2026 (bfbR-amy-cat) CG422 (gomG) CG423 (bglJ) CG427 (gomF) CG480 (fucA) CG482 (manB) CG484 (gomH) CG486 (gomR) CG495 (⌬gom) CG532 (merR-amy-cat) MG1015 (bfrA-amy-cat)
Physiological functiona
Carbohydrate fermentationd
Esculin hydrolysise
Adhesion
Biofilm
Growth rate
Arbutin
Salicin
Man2
GlcN-Man
⫺Glu
⫹Glu
100 72b 91 95 50b 79b 113 84 70 75 88 88 97 97 81 60b 108 67c 58 36
100 70 82 47 98 78 23 30 59 69 101 103 101 99 99 98 96 101 97 65
100 65 65 107 112 109 95 49 55 103 103 119 97 99 104 100 102 114 116 87
⫹⫹⫹ ⫹ ⫹
⫹⫹⫹ ⫹ ⫹
⫹⫹⫹
⫹⫹⫹
⫹ ⫹ ⫹ ⫹⫹⫹ ⫹
⫹ ⫹ ⫹ ⫹ ⫹
⫹⫹ ⫹ ⫹ ⫹ ⫹ ⫹ ⫹ ⫹ ⫺ ⫺
⫹ ⫹ ⫹ ⫹ ⫹ ⫹ ⫹ ⫹ ⫺ ⫺
⫹⫹ ⫺ ⫺ ⫹
⫹⫹⫹ ⫹ ⫹ ⫹⫹
⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹ ⫺ ⫺
⫹⫹⫹ ⫺ ⫺ ⫺ ⫺ ⫺ ⫹⫹⫹ ⫹⫹⫹ ⫺ ⫺ ⫹⫹⫹ ⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫺ ⫺ ⫺
Induction f Esculin
Chito
⫺ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫹⫹⫹ ⫺ ⫺ ⫺ ⫺
⫺ ⫹ ⫹ ⫹ ⫹ ⫺ ⫺ ⫺ ⫺
⫺ ⫺ ⫹⫹⫹
⫺ ⫹
a As percentage of the wild-type activity. Each value represents the average of three sample measurements. Note: several strains showed significant growth reduction, which may have proportionally affected their adhesion and/or biofilm formation. The phenotypes of three mutants, MG2026 (bfbR), CG427 (gomF), and CG486 (gomR), might have polar effects on their downstream genes (Fig. 1). b P ⬍ 0.05. c P ⬍ 0.001. d Fermentation of all other sugars tested, including cellobiose, was not different from that of the wild type. Fermentation results of the four listed sugars are shown. Man2, ␣-1,6-D-mannobiose; GlcN-Man, GlcNAc-1-2 mannose. ⫹⫹⫹, ⫹⫹, and ⫹ indicate strong, medium, and weak positive results; ⫺ indicates a negative result. e Esculin hydrolysis was detected on the esculin ferrous salt agar with or without glucose (Glu). f Induction was performed on agar plates with 0.5% starch for detection of expression of the in-frame fused amy gene. Only strains constructed with the reporter gene-fusion plasmid, pAK36, were tested. In addition to the five strains induced by esculin and chitin oligosaccharides, three additional strains from our previous study (15), KG205 (iviE-amy-cat), KG208 (iviH-amy-cat), and KG211 (msrA-amy-cat), were also induced by the same two sugars.
unknown. The two different regulators may be responsible for controlling the two separate loci. bglC is induced in vivo during experimental endocarditis (15), but it is not induced by any of the commercially available beta-glucoside sugars in vitro. Yet, inactivation of bglC reduced the S. gordonii growth rate (Table 2) and its ability to hydrolyze arbutin and salicin. Nonetheless, the reduction in adhesion to sHA and biofilm formation on plastic might be associated with its defective growth. The second putative regulon, esc, which is induced by the beta-glucoside esculin and oligochitosaccharides, includes six genes. Three genes encode proteins for transport (EscP), metabolism (EscA), and regulation (EscR) of a PTS. Although the functions of the remaining three genes (escB, escC, and escD) are unknown, escB may encode a capsule (polyglutamate) synthase, because it is homologous to the capA gene of other bacteria, especially group B streptococci. Three genes of the regulon, escA, escR, and escB, are induced in vivo in the heart during experimental endocarditis (15) and also were induced in vitro by esculin and oligochitosaccharides (Fig. 2A). Although repressed by glucose (Fig. 2B), induction was attributable to the specific presence of esculin rather than the absence of glucose in the esculin medium, because other betaglucosides, cellobiose, salicin, and arbutin did not induce genes in this regulon. Hence, the sensor system shows considerable specificity for esculin and mammalian cognate sugars. When the wild-type S. gordonii strain grew in a glucosecontaining medium, IPS accumulated (data not shown). Endogenous amylase was induced when the cells were grown in a medium containing both glucose and starch, and IPS was not
seen (Fig. 2C). When mutants defective in esculin-inducible genes were grown in the presence of glucose and starch, however, intracellular ␣-amylase appeared to be repressed (35) and IPS accumulated in the cells (Fig. 2B and C). How these genes affect the accumulation of IPS in S. gordonii is unknown. In S. mutans, the accumulation of IPS is regulated by the cell wall synthesis-associated dlt operon (36). Similarly, esculininducible genes may play a role in S. gordonii cell wall and/or surface polysaccharide synthesis, because mutation in these genes caused defects in in vitro adhesion to sHA, biofilm formation on plastic, and/or the growth rate (Table 2). The esc regulon may be highly conserved, because esc-like regulons exist in many bacteria, including S. mutans (3). In comparison with the S. mutans bgl (5), the S. gordonii esc also has a RAT site upstream of escP, but it does not have a licT-like gene nearby. Moreover, escB, the gene immediately downstream of escP, is not homologous to S. mutans bglB. Although both S. gordonii esc and S. mutans bgl are induced by esculin, the former is repressed by glucose while the latter is not (4). It is unknown why esculin and oligochitosaccharides also induce several other genes, including msrA. Interestingly, when S. gordonii is shifted from the oral pH (slightly acidic) to blood pH (neutral), both msrA and escR (previous name, SGp1224) are induced (42). The third putative regulon, bfb, encodes proteins apparently involved in biofilm-associated beta-glucoside metabolism. It includes seven ORFs, which encode four subunits (BfbA, -B, -C, and -D) of a PTS enzyme II permease, a phospho-betaglucosidase, and a bglG-like antiterminator. Although unin-
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duced in vivo during experimental endocarditis, this regulon was induced during in vitro S. gordonii biofilm formation on sHA. As expected, mutants with mutations in several bfb genes showed reduced biofilm formation on plastic in vitro. Likewise, a fructose PTS operon has been recently linked to S. gordonii biofilm formation (20). The fourth putative regulon, gom, is for glycoprotein-derived oligosaccharide metabolism. It includes 15 genes encoding a binding protein-dependent sugar transport module, a two-component system, a regulator, and five sugar-degrading enzymes (a fucosidase, two mannosidases, an N-acetyl-beta-hexosaminidase, and a beta-glucosidase). The regulon may encode a binding protein-dependent system for transport and the metabolism of multiple sugars, like the msm system in S. mutans (31, 39). However, an msmK-like gene encoding an ATP-binding protein is absent in the gom locus. It may be located elsewhere, as is the case in Streptococcus equisimilis (24). Since the substrate sugars, such as fucosides, mannosides, N-acetyl-betahexosamines, and beta-glucosides, are commonly found in mammalian glycoprotein-derived oligosaccharides, it is not surprising that this regulon was induced only in vivo in the rabbit and not under in vitro growth conditions. Due to the presence of a two-component regulatory system, gomH and gomI, expression of the gom regulon may also be more sensitive to environmental changes than other binding protein-dependent sugar metabolism systems, such as the S. mutans msm operon (39). The gomA gene was expressed in vivo and was an insertion site of the IVET plasmid pAK36, but its function is currently unknown. Mutants defective in manB, gomH, or gomR showed reduced or negative fermentation of GlcNAc-1-2mannose and ␣1-6-D-mannobiose, but the wild-type strain fermented both disaccharides. Hence GlcNAc-1-2-mannose and ␣1-6-D-mannobiose may be substrates of gom, which may be the sole system for hydrolysis of the latter. Controlling expression of the gom regulon, gomR may encode a positive transcriptional regulator, and gomH and gomI may encode a two-component system. Both gomR and gomH are downstream of manB (␣1-6 mannosidase), and the gomR and gomH mutants were defective in fermentation of ␣1-6D-mannobiose. This suggested that the gom regulon for the metabolism of ␣1-6-D-mannobiose was under the control of the two-component system. Moreover, the gom regulon may also control, in part, cell wall biosynthesis, since it contains glmS, which encodes glucosamine-6-phosphate synthase (9). It catalyzes the first step of N-acetylglucosamine biosynthesis, providing a critical constituent for cell wall peptidoglycan. A glmS-related gene, glmM (phosphoglucosamine mutase), in S. gordonii has been associated with the biofilm phenotype (18). Since the gom locus deletion, gomH, and manB mutants showed reduced adhesion to sHA (Table 2), the putative gom regulon may contribute to the integrity of the cell wall and the fidelity of expression of surface adhesin molecules. Except for the gom regulon, pathways for beta-glucoside metabolism in S. gordonii may be inhibited by the presence of the catabolite, glucose. In the presence of glucose, esculin hydrolysis was repressed in the gom deletion mutant (data not shown). Therefore, other pathways for beta-glucoside metabolism appear to be sensitive to catabolite repression by glucose. A post hoc analysis, however, shows that about one-third of the reporter gene-fusion strains constructed by random-site pAK36
J. BACTERIOL.
insertion showed complete glucose-mediated catabolite repression. The reporter amy gene fused in frame with any gene may enable the expressed amylase to hydrolyze intracellular glycogen to release glucose (35). The internally released glucose may in turn repress beta-glucoside regulons. This explains why all amy-cat report gene-fusion strains isolated by induction (KG201 to -213) displayed glucose-mediated inhibition of esculin hydrolysis, while strains isolated due to defects in biofilm formation (MG1006 and MG1007) did not, probably because the reporter amy gene in these mutants was inserted off frame and thus was not expressed (Table 2). Since wild-type S. gordonii showed esculin hydrolysis in the presence of glucose, at least one regulon, gom, is not subject to catabolite repression by glucose. Internally released glucose also appears to be a potent catabolite repressor. It can repress multiple regulons for beta-glucoside metabolism. Arbutin and esculin were not fermented by the amy-cat reporter gene-fusion strains, MG1015 (bfr) and CG532 (merA), in the presence or absence of glucose. In wild-type cells, therefore, conditions favoring hydrolysis of stored polysaccharides may promote strong catabolite repression of several beta-glucoside regulons as an important mechanism for survival during sugar starvation. Based on currently available genomic data published by TIGR, S. gordonii has four different beta-glucosidases. Phylogenetic analysis showed that the S. gordonii beta-glucosidases of the three PTS are related, but the one in the gom regulon, bglJ, is relatively different. The four different beta-glucosidases do differ more in amino acid sequences from one another, however, than from their respective homologues in other species, reflecting different conserved functions and substrate specificities. Because mammalian-derived beta-glucosides are unknown, we tested multiple commercially available beta-glucoside sugars, cellobiose, arbutin, salicin, esculin, and oligochitosaccharides, to identify possible preferred substrates for each system. Only the esc regulon was induced by esculin and oligochitosaccharides. The several beta-glucoside-related genes expressed specifically in vivo may require natural substrates that are embedded in the mammalian oligosaccharides on the heart valve. Interestingly, the bfb genes were not induced in vivo but were induced during biofilm formation on sHA. This suggested that bfb may have a different function from the three other regulons. Since Streptococcus exopolysaccharide has beta-linked repeating disaccharides (7, 43) and its capsule resembles a typical GAG, hyaluronan (34), the expression of these genes in S. gordonii may be needed for the synthesis, remodeling, and/or recycling of cell surface adhesins (glycoproteins) and/or capsule-like polysaccharides. The amy gene as a reporter might have introduced artifact due to possible amylase degradation of intracellular glycogen. There might be still-other-undetected artifacts, but the isolation of beta-glucoside genes could not be attributed to one of them because both the in vivo and in vitro selections were done by the induction of cat gene expression (chloramphenicol resistance). Moreover, Gahan and Hill (10), using listerolysin as an IVET reporter, have also identified an in vivo-induced gene encoding beta-glucoside permease in Listeria. In summary, four different beta-glucoside metabolic systems have been identified in S. gordonii. These systems are induced in vivo and/or contribute to in vitro adhesion and biofilm formation. Not only could they metabolize sugars to provide en-
S. GORDONII BETA-GLUCOSIDE METABOLISM
VOL. 186, 2004
ergy and a carbon source for S. gordonii survival in the host, but also they may be involved in other physiological processes, such as the synthesis of cell surface glycoproteins and/or polysaccharides involved in adhesion and biofilm formation. To understand their preferred substrates and potential roles in streptococcal virulence, further studies of these systems will be necessary.
21. 22. 23.
ACKNOWLEDGMENTS
24.
This work was supported by U.S. Public Health Service grants DE08590 and DE11400. We thank TIGR for its publication of the partially completed S. gordonii genomic sequence.
25.
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