LJ-Table S1 - PLOS

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Cytoplasm Ubiquitin family domain containing protein, expressed ... 0.5633. Cytoplasm ubiquitin interaction motif-containing protein, putative, expressed.
Table S1. Co-expression analysis of HGW in rice (selected gene list) Gene Locus Score TargetP Os02g21970 Os12g41220 Os07g09600 Os07g49150 Os02g10510 Os03g13170 Os04g36700 Os04g53620 Os01g48280 Os01g60410 Os10g11260 Os04g572201 Os03g31400 Os10g396202 Os08g42540 Os03g03130 Os02g11050 Os02g10640 Os06g09330 Os06g09290 Os09g21760 Os03g47770 Os09g12570 Os05g42424 Os09g39500 Os04g34440 Os09g07900 Os03g58700

0.7083 0.6981 0.685 0.6545 0.643 0.6415 0.6397 0.6294 0.6247 0.6241 0.6165 0.6158 0.6142 0.6095 0.6081 0.6028 0.6017 0.5968 0.5927 0.587 0.587 0.5785 0.5702 0.5646 0.5642 0.5633 0.5601 0.5549

Chloroplast Cytoplasm Secreted Cytoplasm Cytoplasm Cytoplasm Cytoplasm Secreted Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm Mitochondria Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm Chloroplast Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm

Annotation

26S protease regulatory subunit 6B, putative, expressed ubiquitin-conjugating enzyme, putative, expressed vesicle-associated membrane protein, putative, expressed 26S protease regulatory subunit 4, putative, expressed Ubiquitin family domain containing protein, expressed ubiquitin fusion protein, putative, expressed proteasome subunit, putative, expressed ubiquitin family protein, putative, expressed ubiquitin-conjugating enzyme, putative, expressed ubiquitin-conjugating enzyme, putative, expressed ubiquitin-conjugating enzyme, putative, expressed ubiquitin-conjugating enzyme, putative, expressed U-box domain-containing protein, putative, expressed ubiquitin family protein, putative, expressed ubiquitin thioesterase otubain-like, putative, expressed ubiquitin-conjugating enzyme, putative, expressed 26S protease regulatory subunit, putative, expressed 26S protease regulatory subunit, putative, expressed ubiquitin-conjugating enzyme, putative, expressed 26S protease regulatory subunit 7, putative, expressed proteasome subunit, putative, expressed ubiquitin-conjugating enzyme E2 W, putative, expressed ubiquitin-conjugating enzyme, putative, expressed ubiquitin family protein, putative, expressed ubiquitin fusion protein, putative, expressed ubiquitin interaction motif-containing protein, putative, expressed ubiquitin-protein ligase 1, putative, expressed vacuolar protein sorting-associated protein 35, putative, expressed

Os07g46660 Os07g07240 Os10g07270 Os04g57520 Os03g15650 Os05g30800 Os01g08200 Os04g40850 Os11g18670

0.552 0.5409 0.5362 0.5324 0.5304 0.5254 0.5227 0.5221 -0.5168

Secreted Mitochondria Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm Cytoplasm

ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed ubiquitin-conjugating enzyme, putative, expressed ubiquitin carboxyl-terminal hydrolase 5, putative, expressed UBX domain-containing protein, putative, expressed vacuolar sorting protein, putative, expressed 26S proteasome non-ATPase regulatory subunit 14, putative, expressed ubiquitin carboxyl-terminal hydrolase 14, putative, expressed 26S proteasome non-ATPase regulatory subunit 6, putative, expressed ubiquitin family protein, putative

Data obtained from http://www.ricearray.org/coexpression/coexpression_search.php and the Plant Proteome Database (PPDB, http://ppdb.tc.cornell.edu/). Genes marked with 1 and 2 in Table S1 and S2 are homologous genes in rice and Arabidopsis.