Nasopharyngeal carriage of respiratory pathogens in

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Nasopharyngeal carriage of respiratory pathogens in Warao Amerindians: significant relationship with stunting Lilly M. Verhagen1,2,3, Meyke Hermsen4, Ismar A. Rivera-Olivero1, María Carolina Sisco1, Marien I. de Jonge2, Peter W.M. Hermans2, Jacobus H. de Waard1

1 Laboratorio de Tuberculosis, Universidad Central de Venezuela, Caracas, Venezuela 2 Laboratory of Pediatric Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands 3 Wilhelmina Children's Hospital Utrecht, Utrecht, The Netherlands 4 Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands

Abstract Objective: To assess risk factors for nasopharyngeal carriage of pathogens in geographically isolated Warao Amerindians in Venezuela. Methods: In this point prevalence survey, nasopharyngeal swabs were obtained from 1064 Warao Amerindians: 504 children aged 0 – 4 years, 227 children aged 5 – 10 years, and 333 caregivers. Written questionnaires were completed to obtain information on demographics and environmental risk factors. Anthropometric measurements were performed in children aged 0 – 4 years. Results: Carriage rates of Streptococcus pneumoniae, Staphylococcus aureus, Haemophilus influenzae and Moraxella catarrhalis were 51%, 7%, 1%, and 13% respectively. Crowding index, method of cooking, and tobacco exposure were not associated with increased carriage. In multivariable analysis, an increase in height-for-age Z score (i.e. improved chronic nutritional status) was associated with decreased odds of S. pneumoniae colonization (OR 0.76, 95% CI 0.70 – 0.83). Conclusions: Better knowledge of demographic and environmental risk factors facilitates better understanding of the dynamics of colonization with respiratory pathogens in an Amerindian population. Poor chronic nutritional status was associated with increased pathogen carriage in children 5 years of age and adults living in tropical rural areas [7, 13, 17]. This increases the size of the respiratory pathogen reservoir in these communities and makes prevention of colonization with potential pathogens for people of all ages particularly important to reduce subsequent respiratory and invasive infections. Knowledge of risk factors for colonization provides starting points for community-based interventions aimed at reduction of colonization and disease rates, such as vaccination programs, interventions with a behavioural or educational component aimed at achieving lifestyle, or environmental sanitary interventions.

Venezuela harbours >20 indigenous populations. The Warao people are the second-largest Amer-

indian population in Venezuela. They reside in wooden houses along the Orinoco Delta, an area of approximately 40,000 km2, where the Orinoco river spreads out in many distributaries towards the Atlantic Ocean. A cross-sectional interview-based survey that included 668 Warao women from 97 geographically spread communities showed that an estimated one-third of Warao children dies dur-

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ing childhood. Over 95% of these deaths occur in children under five years of age. Caregivers reported respiratory tract infections/pneumonia as the cause of death in 18% of all cases [18]. Pathogen-

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specific incidence rates of respiratory infections are not available for the Warao population due to the lack of epidemiological and medical monitoring and recourses. Immunization coverage in the Orinoco Delta is poor, largely due to the inaccessibility of the area [9]. The identification of risk factors for carriage is important to understand the transmission patterns

of respiratory pathogens in families and communities and identify potential preventative measures. In this study, we investigated environmental factors and undernutrition as potential risk factors for nasopharyngeal carriage of potential pathogens in Warao Amerindian children and adults.

Methods Study population This study is an observational, cross-sectional survey of nasopharyngeal colonization in nine geographically spread Warao villages in Antonio Diaz, the largest of four municipalities in the Orinoco Delta. These populations are relatively isolated; Warao villages in this municipality are only accessible by boat. Nasopharyngeal swabs (Copan Italia, Brécia, Italy) were taken as part of a prevaccination survey before the first introduction of the 13-valent pneumococcal conjugate vaccine [19]. Thus, pneumococcal conjugate vaccines had not been introduced in the Orinoco Delta at the time of this survey. Routine vaccination programs are carried out by vaccination teams. The vaccination schedule includes the WHO Expanded Program on Immunization (EPI), i.e. the Bacille Calmette Guérin vaccine at birth; diphtheria, tetanus, and pertussis, and polio vaccines at 2, 4, and 6 months of age; and measles vaccine at 12 months of age. In addition to the EPI vaccines, the schedule includes yellow fever vaccination at 12 months of age; H. influenzae type b (Hib) vaccination at birth, 2, and 4 months of age and rotavirus vaccination at 2 and 4 months. Immunization coverage rates are low: only 27% of children < 5 years of age are fully immunized with the EPI vaccines and 18% is fully vaccinated with the additional non-EPI vaccines [9].

All children