Supplementary Information Targeting myelin lipid ...

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Pik3c2b. Dolk. Agpat5. Crls1. Serac1. Inpp5e. Fabp5. Arf1. Cds2. Ddhd1. Pi4k2b. Pi4kb. Chkb. Ddhd2. Slc27a1. Mtmr2. Pip5k1c. Pip4k2b. Pigu. Inpp5k. Pla2g2d.
Supplementary Information Targeting myelin lipid metabolism as a potential therapeutic strategy in a model of CMT1A neuropathy by Fledrich and Abdelaal et al.

Supplementary Figure 1: a Phospholipid metabolism wt

tg

Lclat1 Ggps1 Pik3c2a Pik3ca Slc44a2 Pikfyve Pik3cb Agpat1 Pik3r3 Pigk Pcyt1a Hexb Frs2 Pigx Dpm1 Dhdds Pigy Samd8 Taz Nus1 Ept1 Pik3r6 Cpne3 Lcat Pigh Agpat4 Mtmr6 Pgap2 Pla2g4b Ocrl Isyna1 Lpcat3 Pik3r4 Pigv Plcg2 Pign Fgfr1 Pik3r2 Mtmr14 Pigt Gab1 Piga Mtmr4 Ache Pi4k2a Phospho1 Pik3c2b Dolk Agpat5 Crls1 Serac1 Inpp5e Fabp5 Arf1 Cds2 Ddhd1 Pi4k2b Pi4kb Chkb Ddhd2 Slc27a1 Mtmr2 Mtm1 Pigs

wt

tg

wt

Pip5k1c Pip4k2b Pigu Inpp5k Pla2g2d Pik3cg Dgke Pik3c3 Pigw Pigl Pld2 Pi4ka Ptpn11 Pigb Dolpp1 Srd5a3 Dpm3 Mppe1 Lpcat4 Slc44a1 Pisd Dpm2 Vac14 Etnk2 Inpp4a Pip5k1a Pigo Pten Atm Pgs1 Lpcat1 Inpp5f Pld1 Sphk2 Pik3r1 Gpaa1 Ppard Tamm41 Lpin2 Inppl1 Agpat2 Cpne7 Mtmr11 Fgf9 Plaur Cecr5 Gpam Pgap1 Lpin3 Synj2 Pik3cd Lpgat1 Inpp5d Irs2 Fgfr2 Pik3r5 Serinc5 Lpin1 Pgap3 Pip5k1b Fgf2 Fgf5 Slc44a5

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wildtype

p=0.906

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Pmp22 tg

300

p=0.164

200 100 0

Gycosphingolipid metabolism

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wt

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St8sia2 Ugt8 St8sia5 A4galt Large Aldh5a1 Arsa Smpd1 Arsg St6galnac3 Ugcg St6galnac6 Smpd3 St3gal1 Arsk Gla Gm2a St3gal3 Arsb Psap Neu3 Gltp Galc Asah1 St3gal6 Sumf1 St8sia4 Hexb Glb1 Kit Cln6 Sts Arsi Gal3st1 Gal3st1 Cln3 B4galnt1 Gba2 Gba Smpd4 St8sia6 Ctsa Smpd2 St3gal2 Neu1 St6galnac2 Hexa Bax St6galnac4 Crem St3gal4 Arse St3gal5 Cerk Itgb8

0

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3

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e

1500

myelinated segments per cover slip [+/-SD]

myelinated segments per cover slip [+/-SD]

wt Hmgcs1 Lss Dhcr24 Idi1 Nsdhl Cyp51 Hmgcr Mvd Msmo1 Ebp Fdft1 Sc5d Fgf1 Fgf1 Hsd17b7 Dhcr7 Fdps Dgat2 Pmvk Mvk Scap Por Ldlrap1 Abcg1 Sec14l2 Ggps1 Sod1 Erlin2 Erlin1 Prkaa1 Acadl Lbr Lmf1 Srebf1 Acadvl Arv1 Ephx2 Apoe

0

d

c

Cholesterol metabolism

tg

myelinated segments per cover slip [+/-SD]

Pla2g5 Idi1 Pip4k2a Mvd Fgf1 Fdps Gpd1 Pla2g16 Fgf4 Pmvk Mvk Sptlc2 Fads1 Serinc4 Irs1 Pemt Inpp4b Ptdss2 Mtmr7 Fgf10 Pigq Pcyt1b Mboat1 Pcyt2 Fgf7 Far1 Pla2g4a Etnk1 Pigp Pla2g6 Chpt1 Ptpmt1 Mboat2 Sgms2 Cdipt Abhd3 Sh3yl1 Synj1 Serinc1 Chka Gnpat Pla2g12a Fig4 Sacm1l Abhd5 Fgf16 Lpcat2 Fitm2 Fgfr3 Pigc Pla2g2a Gpd1l Ptdss1 Agpat3 Pigm Mtmr3 Cept1 Grb2 Sgms1 Sptlc1 Pigf Alg5 Pip4k2c Impa1

b

Pmp22 tg

400

**

300 200 100

l S g/ + m lP C

ro nt



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co S FC

nt ro l FC 2µ S g/ + m lP C

co S FC

S g/ + m lP C



FC

FC

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nt

ro

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Supplementary Figure 1: Perturbed lipid metabolism in Pmp22tg Schwann cells. a-c Gene Ontology (GO) gene sets for the major myelin lipid classes were used to visualize alterations between wildtype (Wt, n=4) and CMT rat (Tg, n=4) mRNA expression in sciatic nerve at P18. The gene sets comprise (a) phospholipid biosynthetic process (M11978), (b) regulation of cholesterol biosynthesis and metabolism (M12147 and M15312) and (c) glycosphingolipid biosynthetic process and metabolism (M13299 and M13858). The gene identifier is given to left of each color coded expression and bold indicates statistically significant regulation. d Wt (left, n=3) and Pmp22tg (right, n=6) DRG cocultures grown in full serum media treated with 2µl/ml PC for 10 days after myelination induction display no treatment effect. Two cover slips per embryo were generated, respectively, whereas one culture was treated and the other culture served as control (paired T-test). e Pmp22tg DRG cocultures grown in delipidated media treated with 2µl/ml PC for 10 days after myelination induction displays improved myelination after treatment, as assessed by immunocytochemical quantification of MBP positive myelin segments per culture. In contrast to Figure 1e, two cover slips per embryo were generated and one culture was treated and the other culture served as control (n=7, paired T-test, p-value: **98% TAG and DAG) according to their double bonds. Significant shift towards species with either two or four double bonds is visible, indicating that the supplemented phospholipid fatty acid tails (mostly C18:2) have passed the mothers milk in the form of neutral lipids. Adjusted p-values are shown (One-way ANOVA, p-value: **