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Supporting Information - PLOS
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Supporting Information - PLOS
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The Dual Oscillator Model equations are as follows. Glycolysis: dGi/dt = JGLUT â JGK. dF6P/dt = (1+kGPI)-(JGK - JPFK). dFBP/dt = (1 + kuc)-1(JPFK â JPDH).
Supporting Information S1 Model Equations The Dual Oscillator Model equations are as follows. Glycolysis: dGi /dt = JGLUT − JGK dF6P/dt = (1 + kGPI )−1 (JGK − JPFK ) dFBP/dt = (1 + kLG )−1 (JPFK − JPDH ) Ge Gi JGLUT = VGLUT − GLC GLC Ge + kGLUT Gi + kGLUT hGLC
JGK = VGK JPFK
Gi GK
hGLC
hGLC
GK Gi GK + kGK P (1 − kPFK )w1110 + kPFK i,j,l∈{0,1} wij1l P = VPFK i,j,k,l∈{0,1} wijkl i j k l 2 2
wijkl =
AMP AMP KPFK
FBP F6P ATP FBP F6P ATP KPFK KPFK KPFK jk jl kl ik il fAMP fFBP fMT fBT fATP
√ JPDH = kPDH FBP
ATP Production/Hydrolysis: dATP/dt = JANT − Jhyd JANT = VANT ADP exp
PDH kANT + kANT
JPDH PDH JPDH + VANT
Cac 1 − Ca kANT
Ca Jhyd = (khyd,bas + khyd Cac )ATP
AMP = ADP2 /ATP ATP + ADP + AMP = Atot Membrane Potential and Calcium Concentrations:
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dV /dt = −(ICa(V ) + IK(V ) + IK(Ca) + IK(ATP) )/Cm dnK(V ) /dt = (nK(V ),∞ − nK(V ) )/τK(V ) Ca dCac /dt = kcyt (JPM − JER ) Ca dCaER /dt = kER JER
Ii(s) = gi(s) ni(s) · (V − Vi ), ni(s),∞ = [1 + (ki(s) /r(s))
i(s) ∈ {Ca(V ), K(V ), K(Ca), K(ATP)}
hi(s) −1
]
,
i(s) ∈ {Ca(V ), K(V ), K(Ca)}
ni(s) = ni(s),∞ for i(s) ∈ {Ca(V ), K(V )} s e if s = V r(s) = s otherwise 2 − MgADP− + 0.89 0.08 1 + 2 MgADP kdd kdd nK(ATP) = 2 − 3− ADP ATP4− 1 + + 1 + MgADP kdd ktd ktt MgADP− = 0.0165ADP ADP3− = 0.135ADP ADP4− = 0.05ATP JPM = −[ICa(V ) /(2F ) + kPM Cac ] JER = kER,in Cac − kER,out (CaER − Cac ) S1 Text. Model Equations. Equations for the Dual Oscillator Model.
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