Table S1. - PLOS

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salt-inducible kinase 2. 0.027 rs7136702 12q13. Tumor. NM_052879. LARP4. La ribonucleoprotein domain family, member 4. 0.023 rs7136702 12q13. Tumor.
Table S1. Differentially expressed genes nomimally associated (p -value < 0.05) with established risk variants for colorectal cancer SNP rs6687758 rs6687758 rs6687758 rs10936599 rs10936599 rs10936599 rs10936599 rs719725 rs719725 rs719725 rs719725 rs719725 rs10795668 rs3802842 rs3802842 rs7136702 rs7136702 rs7136702 rs7136702 rs7136702 rs7136702 rs4444235 rs4444235 rs4444235 rs4779584 rs4779584 rs4779584 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs9929218 rs961253 rs4925386 rs4925386 rs4925386 rs4925386 rs4925386 rs4925386 rs4925386 rs4925386

Locus Tumor/Normal 1q41 1q41 1q41 3q26 3q26 3q26 3q26 9q24 9q24 9q24 9q24 9q24 10p14 11q23 11q23 12q13 12q13 12q13 12q13 12q13 12q13 14q22 14q22 14q22 15q13 15q13 15q13 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 16q22 20p12 20q13 20q13 20q13 20q13 20q13 20q13 20q13 20q13

Tumor Normal Tumor Normal Normal Normal Normal Normal Normal Normal Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Tumor Normal Tumor Tumor Normal Normal Normal Normal Normal Normal Normal Normal Normal Normal Normal Normal Normal Tumor Normal Normal Normal Normal Normal Tumor Tumor Tumor Tumor

RefSeq NM_005681 NM_022831 NM_003268 NM_001122752 NM_014498 NM_005602 NM_020949 NM_203453 NM_014143 NM_025239 NM_017913 NM_002839 NM_001001973 NM_001562 NM_015191 NM_052879 NM_182559 NM_005653 NM_007210 NM_002284 NM_020039 NM_007086 NR_003225 NM_014750 NM_018648 NM_017762 NM_018648 NM_133458 NM_013241 NM_145059 NM_012163 NM_032382 NM_018430 NM_001040667 NM_138383 NM_033309 NM_002801 NM_003946 NM_018380 NM_020786 NM_018430 NM_001009924 BC002531 NM_020062 NM_012469 NM_018257 NM_144498 NM_020882 NM_012384 NM_032957

Gene Symbol TAF1A AIDA TLR5 SERPINI1 GOLIM4 CLDN11 SLC7A14 PPAPDC2 CD274 PDCD1LG2 CDC37L1 PTPRD ATP5C1 IL18 SIK2 LARP4 TMPRSS12 TFCP2 GALNT6 KRT86 ACCN2 WDHD1 LGALS3 DLGAP5 NOP10 MTMR10 NOP10 ZFP90 FHOD1 FUK LRRC29 COG8 TSNAXIP1 HSF4 MTSS1L B3GNT9 PSMB10 NOL3 DDX28 PDP2 TSNAXIP1 C20orf30 C20orf149 SLC2A4RG PRPF6 PCMTD2 OSBPL2 COL20A1 GMEB2 RTEL1

Gene TATA box binding protein (TBP)-associated factor, RNA polymerase I, A axin interactor, dorsalization associated toll-like receptor 5 serpin peptidase inhibitor, clade I (neuroserpin) golgi integral membrane protein 4 claudin 11 solute carrier family 7 phosphatidic acid phosphatase type 2 domain containing 2 CD274 molecule programmed cell death 1 ligand 2 cell division cycle 37 homolog (S. cerevisiae)-like 1 protein tyrosine phosphatase, receptor type, D ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 interleukin 18 (interferon-gamma-inducing factor) salt-inducible kinase 2 La ribonucleoprotein domain family, member 4 transmembrane protease, serine 12 transcription factor CP2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 keratin 86 amiloride-sensitive cation channel 2, neuronal WD repeat and HMG-box DNA binding protein 1 lectin, galactoside-binding, soluble, 3 discs, large (Drosophila) homolog-associated protein 5 NOP10 ribonucleoprotein homolog (yeast) myotubularin related protein 10 NOP10 ribonucleoprotein homolog (yeast) zinc finger protein 90 homolog (mouse) formin homology 2 domain containing 1 fucokinase leucine rich repeat containing 29 component of oligomeric golgi complex 8 translin-associated factor X interacting protein 1 heat shock transcription factor 4 metastasis suppressor 1-like UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 proteasome (prosome, macropain) subunit, beta type, 10 nucleolar protein 3 (apoptosis repressor with CARD domain) DEAD (Asp (Asp-Glu-Ala-Asp) Glu Ala Asp) box polypeptide 28 // 16q22.1 pyruvate dehydrogenase phosphatase isoenzyme 2 translin-associated factor X interacting protein 1 chromosome 20 open reading frame 30 chromosome 20 open reading frame 149 SLC2A4 regulator PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae) protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 oxysterol binding protein-like 2 collagen, type XX, alpha 1 glucocorticoid modulatory element binding protein 2 regulator of telomere elongation helicase 1

p -value 0.043 0.020 0.037 0.007 0.024 0.012 0.003 0.018 0.020 0.019 0.054 0.025 0.005 0.053 0.027 0.023 0.043 0.005 0.016 0.043 0.052 0.038 0.028 0.006 0.006 0.053 0.054 0.033 0.030 0.007 0.005 0.032 0.036 0.008 0.038 0.011 0.025 0.0003 0.002 0.040 0.046 0.028 0.011 0.016 0.036 0.054 0.024 0.052 0.032 0.026