Table S1

Table S1 Gene status and probe specificity for genes within 4 Mb QTL region, which are represented in Microarray dataset. Ensembl

Status

Symbol

Probes

Ensembl

Status

Symbol

Probes

ENSRNOG00000036778

NOVEL

MGI:1923969

G

ENSRNOG00000008205

KNOWN

Wdr68 (pred)

G

ENSRNOG00000028569

KNOWN

Arhgap27

G

ENSRNOG00000008405

KBP

MGI:1917457

A

ENSRNOG00000028521

KNOWN

Plekhm1

G

ENSRNOG00000008441

KNOWN

Map3k3 (pred)

G

ENSRNOG00000003493

KNOWN

PRP-2

A

ENSRNOG00000025448

KNOWN

Limd2

A

ENSRNOG00000003501

KNOWN

Lyzl6 (predicted)

A

ENSRNOG00000008637

KNOWN

Lyk5

G

ENSRNOG00000028436

KNOWN

LOC688223

A

ENSRNOG00000009006

KNOWN

RGD1308813

G

ENSRNOG00000003506

KNOWN

Gosr2

G

ENSRNOG00000009474

KNOWN

Ddx42 (pred)

G

ENSRNOG00000028427

KNOWN

RGD1564452 (pred)

A

ENSRNOG00000009857

KNOWN

Ftsj3

G

ENSRNOG00000003807

KNOWN

Wnt9b (pred)

A

ENSRNOG00000010038

KNOWN

Psmc5

G

ENSRNOG00000003845

KNOWN

Wnt3 (pred)

G

ENSRNOG00000034533 PREDICTED

SNORA51 (RFAM)

none

ENSRNOG00000003905

KNOWN

Nsf

G

ENSRNOG00000010557

KNOWN

Smarcd2

G

ENSRNOG00000004807

KNOWN

Arf2

G

ENSRNOG00000010929

KNOWN

Tcam1

G

ENSRNOG00000004900

KNOWN

Crhr1

G

ENSRNOG00000011207

KNOWN

Gh1

G

ENSRNOG00000005104

KNOWN

RGD1560562 (pred)

G

ENSRNOG00000011917

KNOWN

Cd79b

G

ENSRNOG00000005133

KNOWN

Mapt

G

ENSRNOG00000012134

KNOWN

Scn4a

G

ENSRNOG00000005544

KBP

MGI:1923969

G

ENSRNOG00000036769

KNOWN

RGD1307288(pred)

G

SNORA21 (RFAM)

none

ENSRNOG00000025143

KNOWN

Icam2

G

Cdc27

G

ENSRNOG00000012864

KNOWN

RGD1559716 (pred)

A

A

ENSRNOG00000030011

NOVEL KNOWN

ENSRNOG00000040872 PREDICTED ENSRNOG00000005904

KNOWN

ENSRNOG00000029597

KNOWN

ENSRNOG00000024403

KNOWN

LOC688230

G

ENSRNOG00000013659

ENSRNOG00000006131

KNOWN

Mettl2 (pred)

G

ENSRNOG00000035750 PREDICTED

ENSRNOG00000036774

KBP

MGI:3642916

none

ENSRNOG00000013728

ENSRNOG00000027615

NOVEL

LOC303590

G

ENSRNOG00000006285

KNOWN

Tlk2 (pred)

ENSRNOG00000006548

KNOWN

ENSRNOG00000007084

KNOWN

ENSRNOG00000026364

KNOWN

G Tex2

A

snoZ12 (RFAM)

A

KNOWN

Polg2 (pred)

A

ENSRNOG00000030680

KNOWN

Ddx5

G

G

ENSRNOG00000014354

KNOWN

RGD1309655

G

Mrc2

G

ENSRNOG00000036763

NOVEL

Rnf190

G

ENSRNOG00000014623

KNOWN

G

ENSRNOG00000036761

NOVEL

A Smurf2 (pred)

G A

ENSRNOG00000034939 PREDICTED

U4 (RFAM)

none

ENSRNOG00000015329

KNOWN

Kpna2

G

ENSRNOG00000035196 PREDICTED

U6 (RFAM)

none

ENSRNOG00000015626

KNOWN

LOC688885

A

U11 (RFAM)

A

ENSRNOG00000007433

KBP

Cyb561

G

ENSRNOG00000041108 PREDICTED

ENSRNOG00000007467

KNOWN

Ace

G

ENSRNOG00000036759

NOVEL

ENSRNOG00000008078

KNOWN

Kcnh6

G

ENSRNOG00000015683

KNOWN

KBP = known by projection; G = good; A = ambiguous

G LOC498015

G

Table S2 Comparison of RT-PCR results for chosen subset of MOD QTL genes, relative to 18S

P Value

Ren2.F

Ren2.F-MOD-L

Ren2.L

Ren2.L-MOD-F

Nsf

Basis of Differential expression Parental (Trans)

N.S.

0.81±0.10

0.53±0.09

0.78±0.11

1.07±0.29

Arf2

Parental (Trans)